BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486525
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60510.3 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1520 0.0
> AT3G60510.3 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr3:22356964-22360118 REVERSE
LENGTH=1573
Length=1573
Score = 1520 bits (823), Expect = 0.0
Identities = 918/961 (96%), Gaps = 18/961 (2%)
Strand=Plus/Plus
Query 33 AGCCGATAAACTCGCCACG--AC----AC-GAAAATCGATCCGCCATTTTTGATTTTGCC 85
||| ||||||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct 3 AGCTGATAAACTCGCCACGACACGAAAACGGAAAATCGATCCGCCATGTTTGATTTTGCC 62
Query 86 AAAT-A-AGAGTAGAGTTCTCTAGTTTTGAAC---GAAG-A-A-G-AAGAAGAATGCATA 136
|||| | ||||||||||||||||||||||||| |||| | | | ||||||||||||||
Sbjct 63 AAATAAGAGAGTAGAGTTCTCTAGTTTTGAACGAAGAAGAAGACGAAAGAAGAATGCATA 122
Query 137 ACGCGAATGGG-TTGTTGGGACGAATCGTTAGAGATAAGCTATGGAGATTTGGTTATCGG 195
||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 ACGCGAA-GGGATTGTTGGGACGAATCGTTCGAGATAAGCTATGGAGATTTGGTTATCGG 181
Query 196 AGGAGCTTTTGTTCGCTCAAAGTCACTCCCGAGGATCTTGATTACCAGGTACTCGTTGAA 255
|||||||| || ||||| ||| | ||| |||||||||||||||||||||| |||||||||
Sbjct 182 AGGAGCTTGTGCTCGCTTAAATTGACTTCCGAGGATCTTGATTACCAGGTTCTCGTTGAA 241
Query 256 GGAAGTGGTTGTTCCCGTACTGCGATTCTCAATAGACCACCTGCTCTCAATGCGCTCACC 315
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 242 GGAAGTGGTTGTTCCCGTACTGCGATTCTCAATAGACCACCTGCTCTCAATGCACTCACC 301
Query 316 ACTCACATGGGATATAGGTTGCAGAAGCTTTATAAGAATTGGGAAGAAGATCCAAATATC 375
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 302 ACTCACATGGGATATAGGTTGCAGAAACTTTATAAGAATTGGGAAGAAGATCCAAATATT 361
Query 376 GGGTTTGTGATGATGAAGGGGAGTGGAAGGGCATTTTGTGCTGGTGGTGATATTGTTTCT 435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 GGGTTTGTGATGATGAAGGGGAGTGGAAGGGCATTTTGTGCTGGTGGTGATATTGTGTCT 421
Query 436 CTCTACCATTTAAGAAAGAGAGGTAGCCCGGATGCTATTAGGGAGTTTTTCTCGAGTTTG 495
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTCTACCATTTAAGAACGAGAGGTAGCCCGGATGCTATTAGGGAGTTTTTCTCGAGTTTG 481
Query 496 TATAGTTTTATATACTTGCTAGGCACATATCTAAAGCCACATGTGGCAATTCTTAACGGT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TATAGTTTTATATACTTGCTAGGCACATATCTAAAGCCACATGTGGCAATTCTTAACGGT 541
Query 556 GTTACTATGGGAGGCGGAACTGGAGTTTCGATACCTGGGACATTTCGTGTAGCTACTGAT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTTACTATGGGAGGCGGAACTGGAGTTTCGATACCTGGGACATTTCGTGTAGCTACTGAT 601
Query 616 AGAACTATTTTTGCTACCCCTGAAACAATCATCGGTTTTCATCCTGATGCTGGCGCTTCT 675
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 602 AGAACTATTTTTGCTACCCCTGAAACAATCATCGGTTTTCATCCTGATGCTGGTGCTTCT 661
Query 676 TTTAACCTCTCTCACTTACCTGGTCGCTTAGGGGAGTATCTGGGTCTGACTGGGCTAAAG 735
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 662 TTTAACCTCTCCCACTTACCTGGTCGCTTAGGGGAGTATCTGGGTCTGACTGGGTTAAAG 721
Query 736 ATCAGTGGGGCAGAAATGTTGGCATGTGGCCTTGCGACACATTATATTAGAAGTGAGGAG 795
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 722 CTCAGTGGGGCAGAAATGTTGGCATGTGGCCTTGCTACACATTATATTAGAAGTGAGGAG 781
Query 796 GTTCCTGTAATGGAAGAACAGCTCAAGAAGTTGCTCACTGATGATCCTTCTGTTGTTGAG 855
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 782 GTTCCTGTAATGGAAGAACAGCTCAAGAAGCTGCTCACTGATGATCCTTCTGTTGTTGAG 841
Query 856 TCATCCCTAGAAAAATGTGCAGAAGTTGCCCATCCGGAAAAGACTGGTGTTATTCGTAGG 915
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TCATGCTTAGAAAAATGTGCAGAAGTTGCCCATCCGGAAAAGACTGGTGTTATTCGTAGG 901
Query 916 ATTGATTTACTTGAAAAATGCTTCAGCCATGACACAGTAGAAGAAATTATTGATTCTTTG 975
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 902 ATCGATTTACTTGAAAAATGCTTTAGCCATGACACAGTAGAAGAAATTATTGATTCTTTG 961
Query 976 G 976
|
Sbjct 962 G 962
Score = 676 bits (366), Expect = 0.0
Identities = 391/403 (97%), Gaps = 1/403 (0%)
Strand=Plus/Plus
Query 975 GGAAATCGAGGCTGGTAGAAGAAAAGATACATGGTGCATTACGACTCTACGTAGACTTAA 1034
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GGAAATCGAGGCTAGTAGAAGAAAAGATACATGGTGCATTACGACTCTACGTAGACTTAA 1095
Query 1035 AGAAAGCTCACCGTTATCTTTGAAGGTGGCATTGAGATCTATCCGGGAAGGAAGATTACA 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AGAAAGCTCACCGTTATCTTTGAAGGTGGCATTGAGATCTATCCGGGAAGGAAGATTACA 1155
Query 1095 AACACTTGACCAATGCTTAATCCGAGAGTATAGAATGTCGCTACAAGGATTAATCGGGCC 1154
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1156 AACACTTGACCAATGCTTAATCCGAGAGTACAGAATGTCGCTACAAGGATTAATCGGGCC 1215
Query 1155 AATGTCCGGCAATTTTTGTGAGGGAGTACGAGCTCGATTGATAGACAAGGACGAAGCACC 1214
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1216 AATGTCCGGCAATTTTTGTGAGGGAGTACGAGCTCGATTGATAGACAAGGATGAAGCACC 1275
Query 1215 AAAGTGGGATCCACCGAGCTTGGAGAAAGTATCAGAGGACATGGTTGATGATTACTTCTC 1274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 AAAGTGGGATCCACCGAGCTTGGAGAAAGTATCAGAGGACATGGTTGATGATTACTTCTG 1335
Query 1275 TGCCTTGACTCCCACGGAACCTGATCTTGAGCTTCCTGTCAAACTCAGAGAAAGCATTTA 1334
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1336 TGCCTTGACTCCCACGGAACCTGATCTTGACCTTCCTGTCAAACTCAGAGAAAGCATTTA 1395
Query 1335 GTTTCTTGGTGAAACAAACT-TCAAATTGGCTAACATCACTCC 1376
|||||||| ||||| ||| |||| ||||||||||||| |||
Sbjct 1396 GTTTCTTGATGAAAAAAAAAATCAACTTGGCTAACATCAGTCC 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71033771175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5