BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486528
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60530.1 | Symbols: GATA4 | GATA transcription factor 4 | ch... 1447 0.0
AT5G25830.1 | Symbols: GATA12 | GATA transcription factor 12 | ... 119 6e-26
> AT3G60530.1 | Symbols: GATA4 | GATA transcription factor 4 |
chr3:22373215-22374387 FORWARD LENGTH=1096
Length=1096
Score = 1447 bits (783), Expect = 0.0
Identities = 925/989 (94%), Gaps = 27/989 (3%)
Strand=Plus/Plus
Query 1 GTCTCGGTGCATGTTAACTCTATGCACGTTCTCTCATCTTCGTCTCTTTCCTCACTTACA 60
||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 GTCTCGGTGCATGCTAACTCTATGCACG-T-TCTCATCTTCGTCTCTTTCCTCACTTACA 58
Query 61 CTAActctctctctctATATTAAACCTCTGAACCAGTGA-C-C--ACATACTCAGT---- 112
|||| |||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 59 CTAATTCTCTCTCTCTATATTAAACCTCTGAACCAGTGACCACATACATACTCAGTAAGC 118
Query 113 GAG--CGAGTTAACAATGGACGTATACGGCATGTCGTCACCGGACTTGCTTCGTATCGAC 170
||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 119 GAGTCCGAGTCAACAATGGACGTCTACGGCATGTCTTCACCGGACTTGCTTCGTATCGAC 178
Query 171 GACCTTCTCGATTTCTCCAACGACGAAATCTTCTCTTCCTCCACTTCCTCCACCGTCACT 230
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 179 GACCTTCTCGATTTCTCCAACGACGAAATCTTCTCTTCCTC---TTCC---ACCGTCACT 232
Query 231 TCCTCCGCCGCTTCCTCCGCCGGATCTTCCGAGAACCCTTTCAACTTCCCTTCTTCCGCC 290
|||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||
Sbjct 233 TCCTCCGCCGCTTCCTCCGCCGCTTCTTCCGAAAACCCTTTCAGCTTTCCTTCTTCCACC 292
Query 291 TACACTTCTCCTCCTCTCCTCACCGATTTCACTCACGATCTCTGTGTTCCCAGTGACGAC 350
|||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 293 TACACTTCTCCTACTCTCCTCACCGACTTCACTCACGATCTCTGCGTTCCCAGTGACGAC 352
Query 351 GCAGCTCATCTCGAATGGTTATCACGATTTGTTGACGATTCATTCTCCGATTTCCCAGCG 410
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 353 GCAGCTCATCTCGAATGGTTATCGCGATTCGTTGACGATTCATTCTCCGATTTCCCAGCA 412
Query 411 AATCCTTTAACCATGACCGTTAGACCTGAGATTTCATTCACCGGAAAACCCAGAAGTCGC 470
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 413 AATCCTTTAACCATGACCGTTAGACCCGAGATTTCATTCACCGGAAAACCTAGAAGTCGC 472
Query 471 CGATCAAGAGCACCAGCACCATCCGTAGCTGGAACTTGGGCTCCGATGCCTGAATCCGAG 530
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 473 CGATCAAGAGCACCAGCACCTTCCGTAGCTGGAACTTGGGCTCCGATGTCTGAATCAGAG 532
Query 531 CTTTGTCACTCCGTCGCTAAACCTAAACCGGCGAAAGTATACAACGCCGAATCAATTACG 590
|||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||
Sbjct 533 CTTTGTCACTCCGTCGCTAAACCTAAACCGAAGAAAGTCTACAACGCTGAATCGGTTACG 592
Query 591 GCGGATGTAGGAGGAGGAGGGAGGCGGTGCACGCACTGCGCCTCGGAGAAAACGCCACAG 650
||||||| | || | ||| |||||||||||||| |||||||||||||||||||||
Sbjct 593 GCGGATG--G-AGC-G-AGG----CGGTGCACGCACTGTGCCTCGGAGAAAACGCCACAG 643
Query 651 TGGAGAACGGGACCGCTTGGACCTAAAACGCTTTGTAACGCTTGTGGAGTTCGTTACAAA 710
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 644 TGGAGAACTGGACCGCTTGGACCTAAAACACTTTGTAACGCTTGTGGAGTTCGTTACAAA 703
Query 711 TCAGGGAGGCTTGTACCGGAATACAGACCGGCTTCGAGTCCGACGTTTGTGTTGACTCAG 770
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 704 TCAGGGAGGCTTGTACCGGAATACAGACCGGCGTCGAGTCCGACGTTTGTATTGACTCAG 763
Query 771 CATTCGAACTCTCACCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAACAACAAGAATCT 830
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CATTCGAACTCTCATCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAACAACAAGAATCT 823
Query 831 TGCGTTCGAATTCCGCCGTTTCAGCCGCAGTAAATTTGGGGGTTTTCTTTTCAAGGGTTT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGCGTTCGAATTCCGCCGTTTCAGCCGCAGTAAATTTGGGGGTTTTCTTTTCAAGGGTTT 883
Query 891 TTGTTATTTGGTGACGTGTCGTAATCCTAACGGTGATGATCACGTGACCGACGGGAGGGG 950
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 884 TTGTGATTTGGTGACGTGTCGTAATCTTAACGGTGATGATCACGTGACCGACGGGAGGGG 943
Query 951 TTAAGGACTTAATTATCAGTATTAGTTTA 979
|||||||||||||||||||||||||||||
Sbjct 944 TTAAGGACTTAATTATCAGTATTAGTTTA 972
> AT5G25830.1 | Symbols: GATA12 | GATA transcription factor 12
| chr5:9004313-9005502 REVERSE LENGTH=1081
Length=1081
Score = 119 bits (64), Expect = 6e-26
Identities = 167/216 (77%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 607 GAGG-GAGGCGGTG-CACGCACTGCGCCTCGGAGAAAACGCCACAGTGGAGAACGGGACC 664
|||| ||| ||||| | | ||||||||| |||| || || || || ||| | || || ||
Sbjct 649 GAGGAGAGACGGTGTCTC-CACTGCGCCACGGATAAGACTCCGCAATGGCGGACAGGCCC 707
Query 665 GCTTGGACCTAAAACGCTT-TGTAACGCTTGTGGAGTTCGTTACAAATCAGGGAGGCTT- 722
| || || || ||| || || |||||||| || ||| | |||||||| |||| | ||
Sbjct 708 AATGGGCCCGAAGACG-TTGTGCAACGCTTGCGGTGTTAGGTACAAATC-GGGACGTTTA 765
Query 723 GTACCGGAATA-CAGACCGGCTTCGAGTCCGACGTTTGTGTTGACTCAGCATTCGAACTC 781
|| ||||| || | | || || ||||||||||||||||| || | | || || || ||
Sbjct 766 GTGCCGGAGTATC-GGCCCGCGGCGAGTCCGACGTTTGTGCTGGCGAAACACTCAAATTC 824
Query 782 TCACCGGAAAGTTATGGAGCTCCGGCGACAGAAGGA 817
||| ||||||||||||||||||||||||||||||||
Sbjct 825 TCATCGGAAAGTTATGGAGCTCCGGCGACAGAAGGA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51238829940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5