BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486531
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379805-22... 1079 0.0
AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 | chr2:18591665-18... 549 1e-155
> AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379805-22380641
FORWARD LENGTH=734
Length=734
Score = 1079 bits (584), Expect = 0.0
Identities = 642/671 (96%), Gaps = 0/671 (0%)
Strand=Plus/Plus
Query 16 AAACATCAATGGCGGTTTCGAATTCTTTAACAATCTCTCCGAGGAAACTCCGGTCTGATC 75
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 AAACATCAATGGCCGTTTCGAATTCTTTAACAATCTCTCCGAGGAAACTCCGGTCTGATC 93
Query 76 TCTACTCATACTCATACCAAAACAATTCCGAGACACCTCTGGTTATCTCTGTTTTATCGT 135
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 94 TTTACTCATACTCATACCAAAACAATTCCAAGACACCTCTGGTTATCTCTGTTCTATCGT 153
Query 136 CACTGATCGATCGAACTCTGACTCGAAACGAGAGGATTAGCCGGAGAGCTTTGCCTTCCT 195
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 CACTGATTGATCGAACTCTGACTCGAAACGAGAGGATTAGCCGGAGAGCTTTGCCTTCCT 213
Query 196 CCGGTGCCGGTGGCAAAACTCAGATCTTTGATTGCCGTGAAATCCCTGATATGACAATCC 255
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 214 CCGGCGCCGGTGGCAAAACTCAGATCTTTGATTGCCGAGAAATCCCTGATATGACCATCC 273
Query 256 AATCGTACCTAGAGAGAATTTTCCGGTACACTAAAGCCGGTCCTTCGGTTTACGTGGTAG 315
| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 274 AGTCATACCTAGGGAGAATTTTCCGGTACACTAAAGCCGGTCCTTCGGTTTACGTGGTGG 333
Query 316 CTTATGTCTACATTGACCGGTTCTGTCAAACCAATCCTAGTTTTAGAATCAGTCTCACCA 375
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 334 CTTATGTCTACATTGACCGGTTCTGTCAAACCAATCCCGGTTTTAGAATCAGTCTCACTA 393
Query 376 ATGTACATCGTCTCCTCATCACCACCATCATGATCGCTTCTAAATACGTCAAAGATTTGA 435
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 394 ATGTACATCGTCTACTCATCACTACCATCATGATCGCTTCTAAATACGTCGAAGATTTGA 453
Query 436 ATTACAGGAATTCATATTTTGCGAAAGTAGGTGGATTAGAGACAGAGGATTTGAATAAGT 495
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 454 ACTATAGGAATTCATATTTTGCGAAAGTAGGTGGACTAGAGACAGAGGATTTGAATAAGT 513
Query 496 TAGAGTTAGAGTTTCTGTTCTTGATGGGATTCAAGCTACATGTTAATGTGACTGTGTTCG 555
||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 514 TAGAGTTAGAGTTTCTGTTCTTGATGGGATTTAAGCTACATGTGAATGTGAGTGTGTTCG 573
Query 556 AGAGTTATTGTTGTCATCTTGAAAGAGAGGTTAGCATTGGAGGAGGTTATCAAATCGAAA 615
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 574 AGAGTTATTGTTGTCATCTTGAAAGAGAGGTTAGCTTTGGAGGAGGTTATCAGATCGAGA 633
Query 616 AGGCATTGCGTTGCGCTGAGGAAATCAAATCCAAACAAATGATCGTTCAAGATCCTAAAC 675
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 634 AGGCATTGCGTTGCGCTGAGGAAATCAAATCCAGACAAATGATCATTCAAGATCCTAAAC 693
Query 676 ATCATCATCAT 686
|||||||||||
Sbjct 694 ATCATCATCAT 704
> AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 | chr2:18591665-18592455
FORWARD LENGTH=704
Length=704
Score = 549 bits (297), Expect = 1e-155
Identities = 552/671 (82%), Gaps = 34/671 (5%)
Strand=Plus/Plus
Query 51 TCTCCGAGGAAACTCCGGTCTGATCTCTACTCATACTCATACCAAAACAATTCCGAGAC- 109
||||| ||||| ||||| || || |||||||| ||||| |||||| | ||||| | ||
Sbjct 42 TCTCCAAGGAAGCTCCGATCAGACCTCTACTCTTACTCTTACCAAGATGATTCCAACACA 101
Query 110 --ACCTCTGGTTATCTCTGTTTTATCGTCACTGATCGATCGAACTCTGA-CTCGAAACGA 166
|||||| || ||||||||| | ||||| |||||||| |||||| | | || | |||||
Sbjct 102 GTACCTCTAGTCATCTCTGTTCTCTCGTCTCTGATCGAACGAACT-TTAGCTAGGAACGA 160
Query 167 GAGGATTAGCCGGAGAGCTTTGCCTTCCTCCGGTGCCGGTGGCAAAACTCAG-ATCTTTG 225
||| || |||| | || | || ||||| ||| || || | | ||||||
Sbjct 161 GAGAATCAGCC-G-GA-----G-----CTACGGTGGTTTTGGTAAGACAC-GTGTCTTTG 207
Query 226 ATTGCCGTGAAATCCCTGATATGACAATCCAATCGTACCTAGAGAGAATTTTCCGGTACA 285
||||||| || || ||||||||||| || ||||| ||||||||||||||||||||||| |
Sbjct 208 ATTGCCGGGAGATTCCTGATATGACTATTCAATCATACCTAGAGAGAATTTTCCGGTATA 267
Query 286 CTAAAGCCGGTCCTTCGGTTTACGTGGTAGCTTATGTCTACATTGACCGGTTCTGTCA-A 344
| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
Sbjct 268 CCAAAGCCGGTCCATCGGTTTACGTCGTGGCTTATGTATACATTGACCGGTTCTGTCAGA 327
Query 345 ACCAATCCTA-GTTTTAGAATCAGTCTCACCAATGTACATCGTCTCCTCATCACCACCAT 403
| || || | |||| ||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 328 A-TAA-CCAAGGTTTCAGAATCAGTCTTACCAATGTACATCGTCTCCTTATCACAACTAT 385
Query 404 CATGATCGCTTCTAAATACGTCAAAGATTTGAATTACAGGAATTCATATTTTGCGAAAGT 463
|||||||||||| ||||||||| ||||| |||| |||| || || || |||||||||||
Sbjct 386 CATGATCGCTTCCAAATACGTCGAAGATATGAACTACAAAAACTCGTACTTTGCGAAAGT 445
Query 464 AGGTGGATTAGAGACAGAGGATTTGAATAAGTTAGAGTTAGAGTTTC-TGTTCTTGATGG 522
||| |||||||||||||| |||||||| || || || | ||| ||| ||||||||||||
Sbjct 446 AGGAGGATTAGAGACAGAAGATTTGAACAATTTGGAACTGGAG-TTCTTGTTCTTGATGG 504
Query 523 GATTCAAGCTACATGTTAATGTGACTGTGTTCGAGAGTTATTGTTGTCATCTTGAAAGAG 582
|||| ||| | ||||| ||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 505 GATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAGTTACTGTTGTCATCTAGAAAGAG 564
Query 583 AGGTTAGCATTGGAGGAGGTTATCAAATCGAAAAGGCATTGCGTTGCGCTGAGGAAATCA 642
| || || ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 565 AAGTGAGTATTGGAGGAGGTTATCAGATCGAAAAAGCATTGCGTTGCGCTGAGGAAATCA 624
Query 643 AATCCAAACAAATGATCGTTCAAGATCCTAAACATCATCATCA---T---TTTGCTCGAA 696
|||| | |||||| | |||||||| ||||||||||||||||| | ||| ||||||
Sbjct 625 AATCTAGACAAAT--T-GTTCAAGACCCTAAACATCATCATCACCATCAATTTTCTCGAA 681
Query 697 TCTTGTTGTAG 707
|| ||||||||
Sbjct 682 TCATGTTGTAG 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5