BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486537
Length=2195
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family transcr... 3217 0.0
AT2G45160.1 | Symbols: HAM1, ATHAM1, LOM1 | GRAS family transcr... 573 2e-162
> AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family transcription
factor | chr3:22410365-22412608 REVERSE LENGTH=2244
Length=2244
Score = 3217 bits (1742), Expect = 0.0
Identities = 1920/2005 (96%), Gaps = 15/2005 (1%)
Strand=Plus/Plus
Query 199 AGATTGGTCATGCCCCTGCCCTTTGAGCAATTTCAAGGGAAGGGGGTTCTGGGTTTCTTA 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 AGATTGGTCATGCCCCTGCCCTTTGAGCAATTTCAAGGGAAGGGGGTTCTGGGTTTCTTA 292
Query 259 GATTCTTCTTCTTCTCCGGGATACAAAATCTGGGCTAATCCAGAGAAACTCCATGGACGA 318
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 293 GATTCTTCTTCTTCTCCGGGATACAAAATCTGGGCTAATCCAGAGAAGCTCCATGGACGA 352
Query 319 GTAGACGAAGATCTCTGCTTTATTGTTAACAATGGTGGTTTCTCGGAGCCGACGTCTGTT 378
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 353 GTAGAAGAAGATCTCTGCTTTGTTGTCAACAATGGTGGTTTCTCGGAGCCGACGTCTGTT 412
Query 379 TTAGACTCTGTTAGAAGTCCAAGCCCTTTCGTCTCTTCTTCAACCACCACGCTGTCTTCT 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TTAGACTCTGTTAGAAGTCCAAGCCCTTTCGTCTCTTCTTCAACCACCACGCTGTCTTCT 472
Query 439 TCTCACGGTGGTCCCAGCGGCGGCGGCGCTGCTGCTGCTACTTTTTCCGGCGCCGATGGG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TCTCACGGTGGTCCCAGCGGCGGCGGCGCTGCTGCTGCTACTTTTTCCGGCGCCGATGGG 532
Query 499 AAATGCGAACAAATGGGTTTCGAGGATCTCGATGGTGTTCTCTCCGGTGGCTCGCCGGGA 558
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AAATGCGACCAAATGGGTTTCGAGGATCTCGATGGTGTTCTCTCCGGTGGCTCGCCGGGA 592
Query 559 CAAGAACAGAGTATTTTTAGATTAATCATGGCTGGTGATGTAGTGGATCCGGGTTCTGAG 618
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 593 CAAGAACAGAGTATTTTTAGATTAATCATGGCTGGCGATGTAGTGGATCCGGGTTCGGAG 652
Query 619 TTTGTGGGTTTCGACACCGGTTCTGGATCCGACCCGGTTATTGATAATCCTAATCCACTC 678
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTTGTGGGTTTCGACATCGGTTCTGGATCCGACCCGGTTATTGATAATCCTAATCCACTC 712
Query 679 TTTGGCTATGGCTTCCCTTTTCACGACCCACCGGAAGAAGAGAAGTTTCAGATTTCAATA 738
||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 713 TTTGGATATGGCTTCCCTTTTCAAAACGCACCGGAAGAAGAAAAGTTTCAGATTTCAATA 772
Query 739 AACCCAAATCCGAGTTTCTTCTCGGATCCTCCGTCGTCTCCTCCTGCGAAAAGGCTCAAT 798
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 773 AACCCAAATCCGGGTTTCTTCTCGGATCCTCCGTCGTCTCCTCCTGCGAAACGGCTCAAT 832
Query 799 TCGGGTCAACCCGGATCTCAACACCACCACCAACAGTGGGGTTTCCCGTTCTCGGATCCG 858
||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 833 TCGGGTCAACCCGGATCTCAACACCTCCA------GTGGGTTTTCCCGTTCTCGGATCCG 886
Query 859 GGTCACGAATCTCACGACCCGTTTCTCACGCCGCCAAAGATAGCCGGAGAAGACCAAAAC 918
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 887 GGTCACGAATCTCACGACCCGTTTCTCACACCGCCAAAGATAGCCGGAGAAGACCAAAAC 946
Query 919 GACCAAGACCAGTCAACGGTAATCATCGACCAGCTATTCTCTGCGGCGGCGGAGCTCACA 978
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GACCAAGACCAGTCAGCGGTAATCATCGACCAGCTATTCTCTGCGGCGGCGGAGCTCACC 1006
Query 979 ACAAACGGCGGAGATAACAATCCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ACAAACGGCGGAGATAACAATCCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1066
Query 1039 AACCTTAACAACAAC---GAC-AC--TAACAACAATCCTAAACCTCCGTTTCGTAGAGCA 1092
||||||||||||||| ||| || |||||||||||||||||||||||| | ||||||
Sbjct 1067 AACCTTAACAACAACAACGACGACACTAACAACAATCCTAAACCTCCGTTCCACAGAGCA 1126
Query 1093 GCTTCGTATATAACCGAAGCTCTTCACTCTCTTCTTCAAGACTCATCATCATCACCACCG 1152
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1127 GCTTCGTATATAACAGAAGCTCTTCACTCTCTCCTTCAAGACTCATCATTATCACCACCG 1186
Query 1153 TCTCTCTCACCTCCTCAAAACCTAATCTTTCGAATCGCAGCTTACAGAGCTTTCTCGGAA 1212
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1187 TCTCTCTCACCTCCTCAAAACCTAATCTTTCGGATCGCAGCTTACAGAGCTTTCTCAGAA 1246
Query 1213 ACGTCACCGTTTCTTCAATTCGTCAATTTCACAGCAAACCAGACGATTCTTGAGTCCTTC 1272
|||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||
Sbjct 1247 ACGTCACCGTTTCTTCAATTCGTCAACTTCACAGCAAACCAAACGATTCTCGAGTCATTC 1306
Query 1273 GAAGGATTTGATCGAATCCACATTGTCGATTTCGATATCGGTTACGGAGGTCAATGGGCG 1332
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1307 GAAGGGTTTGATCGGATCCACATTGTCGATTTCGATATCGGTTATGGAGGTCAATGGGCG 1366
Query 1333 TCTCTGATTCAAGAGCTCGCCGGAAAAAGAAACAGATCTTCGTCAGCTCCGTCGCTAAAG 1392
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1367 TCTCTGATTCAAGAGCTCGCCGGAAAAAGAAACAGATCTTCATCAGCTCCGTCGCTAAAG 1426
Query 1393 ATTACAGCTTTCGCTTCTCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 ATTACAGCTTTCGCTTCTCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAA 1486
Query 1453 GAAAATCTCAGAAGTTTCGCTGGAGAAACCGGAGTCTCCTTCGAAATCGAGCTCTTGAAC 1512
|||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| |||
Sbjct 1487 GAAAATCTCAGAAGCTTCGCCGGCGAAACAGGTGTCTCCTTCGAAATCGAGCTCTTAAAC 1546
Query 1513 ATGGAGATTCTCTTGAATCCAACTTATTGGCCACTCTCTTTACTCCGATCATCGGAGAAA 1572
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1547 ATGGAGATTCTCTTGAATCCAACTTATTGGCCACTGTCTTTATTCCGATCATCGGAGAAA 1606
Query 1573 GAAGCAATTGCTGTGAATCTTCCAATCAGCTCCATTGTCTCCGGTTACCTCCCATTGATA 1632
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1607 GAAGCAATCGCTGTGAATCTCCCAATCAGCTCCATGGTCTCCGGTTACCTCCCATTGATA 1666
Query 1633 CTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGATAGAAGCTGCGAC 1692
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1667 CTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAAGCTGCGAC 1726
Query 1693 CGCAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTCCAGTACTACACATCT 1752
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1727 CGTAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTTCAGTACTACACATCT 1786
Query 1753 CTGCTCGAGTCTCTCGACTCTGGGAATCTGAATAATGCGGAAGCTGCTTCGAGTATTGAG 1812
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1787 CTGCTCGAGTCTCTCGACTCTGGGAATCTGAATAATGCGGAAGCTGCTACGAGTATTGAG 1846
Query 1813 AGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGCAG 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1847 AGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGGAG 1906
Query 1873 AGATCGCCGCCGTGGAGAAGCTTGTTTGGGCAATGTGGGTTTTCTCCGGTGACGCTGAGT 1932
||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 1907 AGATCACCGCCGTGGAGAAGCTTATTTGGGCAATGTGGGTTTACTCCTGTGACGCTGAGT 1966
Query 1933 CAGACGGCGGAGACACAGGCGGAGTATTTGTTGCAGAGGAATCCGATGAGAGGGTTTCAC 1992
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1967 CAGACGGCGGAGACACAAGCGGAGTATTTGTTGCAGAGGAATCCAATGAGAGGGTTTCAC 2026
Query 1993 TTGGAGAAGAGACAGTCATCGTCGTCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTT 2052
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 2027 TTGGAGAAGAGACAGTCTTCGTCGCCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTT 2086
Query 2053 GTTACTGTCTCAGCTTGGAAATGTTGAGAGGAAAAATTATGATATTT-CAGGGTTCAATT 2111
||||||||||||||||||||||||| ||| |||||| | ||||||| || |||| ||||
Sbjct 2087 GTTACTGTCTCAGCTTGGAAATGTTAAGACGAAAAAGGAGGATATTTTCACGGTTTAATT 2146
Query 2112 TTCTTTTCT-TAGCTTTTTAATTTGGGTTATATCATGTTTTAATATGTTTGATTGTGATG 2170
||||||| | |||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2147 TTCTTTT-TGTAGCTTTTCAATTTGGGTTAGATCACGTTTTAATATGTTTGATTGTGATG 2205
Query 2171 TTAACCAATCAAATGATATATATAT 2195
|||||||||||||||||||||||||
Sbjct 2206 TTAACCAATCAAATGATATATATAT 2230
Score = 327 bits (177), Expect = 2e-88
Identities = 192/199 (96%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1 AAAAGAGAGCATTTTTGATGAAGATCATCACTTTGGAATGTTGTTGCAATCATCCAGAGT 60
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAAAGAGAGCATTTTTTATGAAGATCATCACTTTGGAATGTTGTTGGAATCATCCAGAGT 60
Query 61 CAATATACATAAGC-ACAGTGAAGAAAGATTGTTATTAACAACGAGTGTGAGATAATGTG 119
|||||||||||||| || | ||||||||||||||||||| | ||||||||||||||||||
Sbjct 61 CAATATACATAAGCAAC-GAGAAGAAAGATTGTTATTAATACCGAGTGTGAGATAATGTG 119
Query 120 GGCGCCAATTTCAGTTTCAAGCTTTCATCTTCGTCTTCCTCTTTAAGTTCTGAGATCTAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGCGCCAATTTCAGTTTCAAGCTTTCATCTTCGTCTTCCTCTTTAAGTTCTGAGATCTAG 179
Query 180 GGTTTTTCTGGGTTTCTTT 198
|||||||||||||||||||
Sbjct 180 GGTTTTTCTGGGTTTCTTT 198
> AT2G45160.1 | Symbols: HAM1, ATHAM1, LOM1 | GRAS family transcription
factor | chr2:18617862-18620150 REVERSE LENGTH=2289
Length=2289
Score = 573 bits (310), Expect = 2e-162
Identities = 868/1122 (77%), Gaps = 99/1122 (9%)
Strand=Plus/Plus
Query 1001 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACAACCTTAACAACAACGACACTA 1060
|||||||||||||||||||||||||||||||||||||| | || |||| | | | | ||
Sbjct 987 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCATCTCAACA-CTA-GT-AGTA 1043
Query 1061 ACAACAATCCTAAACCTCCGTTTCGTAGAGCAGCTTCGT-ATATAACCGAAGCTCTTCAC 1119
|| |||| | | |||||||| ||||||||||| | | || | |||||||| | |
Sbjct 1044 ACCACAAG--T---C-TCCGTTTCAAAGAGCAGCTTC-TCACATCGCTGAAGCTCT-C-C 1094
Query 1120 TCTCTTCTTCAAGACTCATC-A-TCATCACCACCGTCTCTCTCACCTCCTCAAAACCTAA 1177
|||| || || | || | | ||||||||||||| | |||| || | || || |
Sbjct 1095 TCTCA-CT-CATC-CACAACGAATCATCACCACCGT-TAA-TCACG-CCGGAGAATCTGA 1148
Query 1178 TCTTTC-GAATCGCAGCTTACAGAGCTTTCTCGGAAACGTCACCGTTTCTTCAATTCGTC 1236
| | || ||||||| ||||||||| | ||||| ||||| || |||||||| ||||||||
Sbjct 1149 T-TCTCCGAATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTT 1207
Query 1237 AATTTCACAGCAAACCAGA-CGATTCTTGAGTCCTTC---GAA---GGATTTGATCGAAT 1289
|| |||||||| || || | ||||||||||||||| | ||| || |||||||| ||
Sbjct 1208 AACTTCACAGCGAATCA-ATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGGAT 1266
Query 1290 CCACATTGTCGATTTCGATATCGGTTACGGAGGTCAATGGGCGTCTCTGATTCAAGAGCT 1349
||||||| |||||||||| | || || ||||| |||||| ||||||| || ||||| ||
Sbjct 1267 CCACATTATCGATTTCGACGTTGGATATGGAGGACAATGGTCGTCTCTAATGCAAGAACT 1326
Query 1350 CGC--C-GGAA----A--AAGAA-ACAGAT-CTTCGTCAGCTCCGTCGCTAAAGATTA-C 1397
||| | ||| | ||||| | ||| | | || || ||| || || |||| |
Sbjct 1327 CGCTTCCGGAGTTGGAGGAAGAAGA-AGAAACAGAG-CA--TC-GTCTCTGAA-ATTAAC 1380
Query 1398 AG-CTTTCGCTTCTCC---TTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAAG 1453
|| |||| ||| |||| ||| || ||||||||||| |||||||| || ||||| || |
Sbjct 1381 AGTCTTT-GCTCCTCCACCTTCTACAGTCTCCGACGAGTTCGAGCTTCGTTTCACAGAGG 1439
Query 1454 AAAATCTCAGAAGTTTCGCTGGAGAAACCG-GAGTCTCCTT-CGAAATCGAGCT-CTTGA 1510
||||||||| || ||||| |||||| | || | ||||| |||||||||| | || |
Sbjct 1440 AAAATCTCAAAACATTCGCCGGAGAAGTCAAGA-T-TCCTTTCGAAATCGAGTTACT--A 1495
Query 1511 A-CATGGAGATTCT-CTTGAATCCAACTTATTGGCCACTCTCTTTACTCCGATCATCGGA 1568
| | | ||| |||| || || ||| ||||||||||||||||| ||| | ||||||||
Sbjct 1496 AGCGTAGAGCTTCTTCTA-AACCCAGCTTATTGGCCACTCTCTCTAC---GTTCATCGGA 1551
Query 1569 GAAAGAAGCAATTGCTGTGAATCTTCCAATCAGCTCCATTGTCTCCGGTTACCTCCCATT 1628
||||||||||| || |||||||||||| | | |||| | | |||||||||||| || ||
Sbjct 1552 AAAAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCCTCCGGTTACCTTCCGTT 1611
Query 1629 GATACTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGATAGAAGCTG 1688
|| || || ||||| || ||| | ||||||||| |||||||||||||||| ||| | ||
Sbjct 1612 AATCCTCCGATTCCTTAAACAACTATCACCAAACATCGTCGTTTGCTCAGACAGAGGATG 1671
Query 1689 CGACCGCAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTCCAGTACTACAC 1748
||||| ||| ||||||||||| || |||| |||||| | |||| || ||| ||||
Sbjct 1672 TGACCGTAAC---GACGCGCCGTTTCCAAACGCAGTGATTCATTCGCTTCAATACCACAC 1728
Query 1749 ATCTCTGCTCGAGTCTCTCGACT-CTGGGAATCTGAATAATGCGGAAGCTGCTTCGAGTA 1807
|||||||| |||||||| || | || |||| ||| | | | | | | ||||||||
Sbjct 1729 TTCTCTGCTTGAGTCTCTTGA-TGCT---AATCAGAACCA-G-G-A--C-GATTCGAGTA 1778
Query 1808 TTGAGAGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGA 1867
| ||||||||||| || ||||| |||||| |||| ||||||| ||| || |||||||||
Sbjct 1779 TCGAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTTGATGAAACGACACCGTTGGA 1838
Query 1868 T-GCAGAGATCGCCGCCGTGGAGAAGCTTGTTTGGGCAATGTGGGTTTTCTCCGGTGACG 1926
| | | ||||| || |||||||||| ||||||| ||||||||||||||||||| || |
Sbjct 1839 TTGAA-AGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGGCGA-G 1896
Query 1927 CT-GAGTCAGACGGCGGA-GACACAGGCGGAGTATTTGTTGCAGAGGAATCCGATGAGAG 1984
| |||||||| |||||| | | |||||||||| |||||||||||| |||||| ||||||
Sbjct 1897 TTTGAGTCAGATGGCGGAAG-CTCAGGCGGAGTGTTTGTTGCAGAGAAATCCGGTGAGAG 1955
Query 1985 GGTTTCAC-TTGGAGAAGAGACAGTCATCGTCGTCTTCACTTGTCTTGTGTTGGCAGAGG 2043
|||||||| ||| |||| || | || ||| | | |||||||| |||||||||| |||
Sbjct 1956 GGTTTCACGTTG-AGAAAAG---G-CA--GTC-T-T-CACTTGTCATGTGTTGGCAAAGG 2005
Query 2044 AAAGAACTTGTTACTGTCTCAGCTTGGAAATGTTGAGAGGAA 2085
|||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 2006 AAAGAACTTGTTACTGTCTCTGCTTGGAAATGTT-AGACGAA 2046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108884982105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5