BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486539
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60660.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1681 0.0
> AT3G60660.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1395 (InterPro:IPR009829);
Has 131 Blast hits to 131 proteins in 44 species: Archae
- 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45;
Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). |
chr3:22421410-22423477 FORWARD LENGTH=1200
Length=1200
Score = 1681 bits (910), Expect = 0.0
Identities = 1082/1161 (93%), Gaps = 27/1161 (2%)
Strand=Plus/Plus
Query 1 TTGGGAGATTGAGAGAGATTCGTGAAGAATGGAGGGAAATCAAGCTGGATCTTCTCTAGA 60
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 44 TTGGGAGATTGAGAGAGGTTAGTGAAGAATGGAGGGAAATCAAGCTGGATCTTCTCTAGA 103
Query 61 CTCGTTGATTGCTTCGTTCAATAAACGAATCTGCGAATTGCAGGAACTCGTCATCGCCAG 120
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 104 TTCGTTGATTGCTTCTTTCAATAAACGAATCGGCGAATTGCAGGAACTCGTCATCGCCAG 163
Query 121 AAACATGTATCCGGCGAGTACCATCCCGGATTTATCGGCGATTGACACGGCGTTGAGCTC 180
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 164 AAACATGTATCCTGCAAGTACCATCCCGGATTTATCGGCGATTGACACAGCGTTGAGCTC 223
Query 181 AATGGAGCTTCAGGTACAATCCATCAAGGACCGGTTACGTGAAGAAACCGAAGCTATTCC 240
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 224 AATGGAGCTTCAGGTACAATCGATCAAGGACCGATTACGTGAAGAAACCGAAGCTATTCC 283
Query 241 AAAAGCCAAGAAACTTATTGAGTCATCACTGAAACAGCAAGGGAAATTGCAGAAGATGTC 300
|||||| ||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 284 AAAAGCTAAGAAACTTATAGAGGCATCACTGAAACAACAAGGGAAGTTGCAGAAGATGTC 343
Query 301 TATTTATGCACCTTCCCATATTCCTGACAGGGCTACAATGTTGAATTCAGATTTGAATAG 360
||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||
Sbjct 344 TATTTATGCACCTTCCCATTTTCCTGACAAGGCTACTATGTTGAATTCAGATTTAAATAG 403
Query 361 ATGTTTGCTCCAAGAAAATGCCAAGCAGTACGAGCAACATTCAATTCCCAGCTCTTTGAA 420
|||| |||||||||| |||||||||||||||||||||||||| | || ||||||||||||
Sbjct 404 ATGTCTGCTCCAAGAGAATGCCAAGCAGTACGAGCAACATTCTACTCTCAGCTCTTTGAA 463
Query 421 ATTTGATGAGGAAGTAGCTGTTTTACCCAAGGAAAAGAAGGGTCGCGGGTCTCCTCCGCT 480
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 464 ATTTGATGAGGAAGCAGCTGTTTTACCCAAGGAGAAGAAGGGTCGCGGGTCTCCTCCCCT 523
Query 481 TTGGTACATCACTGTTGAGGAACTCAATTCACTCTCATCATACATGAGAGGAAGGCTCAC 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TTGGTACATAACTGTTGAGGAACTCAATTCACTCTCATCATACATGAGAGGAAGGCTCAC 583
Query 541 GCTTGAAAAAGTGAATGCTGCTATCAATGACATGGCCTCATATGCTGAAGCAAATGCTCA 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CCTTGAGAAAGTGAATGCTGCTATCAATGACATGGCCTCATATGCTGAAGCAAATGCTCA 643
Query 601 TCTTATTGCAGCCTCAAAACAGAAGCCGGCGGAAAATCTCTGGGAGAAAGCACTGAAACT 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 644 TCTTATTGCAGCCTCAAAACAGAAGCTAGCGGAAAATCTCTGGGAGAAAGCACTTAAACT 703
Query 661 ACGAGATATCGTAACAGAGCAAGCAGTGAAGGGCAAACATTTCTTTCTTGAAACTGACAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ACGAGATATCGTAACAGAGCAAGCAGTGAAGGGCAAACATTTCTTTCTTGAAACTGACAT 763
Query 721 GAAGGGACCAAGTTTGAAACTAGACAACACAGGAAAAGCAATACTCACTGTTCTTCGTCA 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 764 GAAGGGACCAAGTTTGAAACTAGACAACACAGGAAAAGCAATACTTACTGTTCTTCGCCA 823
Query 781 CCTTGGTCGTATCAGTGAGACTCGCATTGGACAAAACCGCGTCATCATTCTTATGAAGCC 840
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CCTTGGTCGTATTAGTGAGACTCGCATTGGACAAAACCGCGTCATCATTCTTATGAAGCC 883
Query 841 TCACTAGAAACCAAC----TTGCCGCAAGTAAGCTGTTCATTTTCTCAAAGAGTAAAGGG 896
||||||||||||||| ||||| |||||||| ||||||||||| ||| | |||| |||
Sbjct 884 TCACTAGAAACCAACCAACTTGCCTCAAGTAAGTTGTTCATTTTCACAA-GCGTAA-GGG 941
Query 897 GTAATTCCGTCATTTTCCA-TCAATTTCTTGCTTC-----A--T--T-GTACCA------ 939
|||||||||||||||| || | | ||||||||||| | | | ||||||
Sbjct 942 GTAATTCCGTCATTTTTCAAT-AGTTTCTTGCTTCTTCTGAGCTCCTTGTACCATAGAAT 1000
Query 940 CA--GAAGGTCTACTGGTCCTTTAAACACCATTAAGCCTTAATCTTAATTCTTAAGACCG 997
|| |||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 1001 CATAGAAGGTCTACTGGTCCCTTAAACATCATTAAGCCTTAATCTTAATCCTTAAGACCG 1060
Query 998 GTCCGCCTGACAGGCCCAGCTAGGCCCAGCATTTGAATTTATAATATGGACAAAAATGTT 1057
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1061 GCCCGCCTGACAGGCCCAGCTAGGCCCAGGATTTGAATTTATAATATGGACAAAAATGTT 1120
Query 1058 TAATGCAATTTCTCATATTTTCATAAAAGTAGAAAAACTCGATTTCCGTTATTTTCATAA 1117
||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TAATGCAATTT-TCACATTTGCATAAAAGTAGAAAAACTCGATTTCCGTTATTTTCATAA 1179
Query 1118 TATTATAAAAGTAATTTTTCT 1138
||||| ||||| ||||| |||
Sbjct 1180 TATTAAAAAAGCAATTTCTCT 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5