BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486540
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60670.1 | Symbols: | PLATZ transcription factor family pro... 1443 0.0
> AT3G60670.1 | Symbols: | PLATZ transcription factor family protein
| chr3:22424512-22426288 REVERSE LENGTH=1018
Length=1018
Score = 1443 bits (781), Expect = 0.0
Identities = 917/979 (94%), Gaps = 23/979 (2%)
Strand=Plus/Plus
Query 37 AAAA-CACCTCCCAGTGTAGATAAACAGAAGAAGAGAATCC-A-ATGGAATCTGGAGAAT 93
|||| ||||||||||||||||||| |||||||||| || || | ||||||||||||||||
Sbjct 54 AAAACCACCTCCCAGTGTAGATAACCAGAAGAAGATAAGCCAAGATGGAATCTGGAGAAT 113
Query 94 TTCCTGCATGGCTTGAGGTTTTGTTAAAAGACAAGTTTTTCAACGCTTGTTTGGATCATG 153
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 114 TTCCTGCATGGCTTGAGGTTCTGTTAAAAGACAAGTTTTTCAACGCTTGTTTGGATCATG 173
Query 154 AAGATGTTAAGAAGAACGAGAAGAACATTTTATGTATCGATTGTTGTCTTAGCATCTGTC 213
|||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 174 AAGATGATAAGAAGAACGAGAAGAACATATTATGTATCGATTGTTGTCTTACCATCTGTC 233
Query 214 CTCACTGTCTCTCTTCACATACCACTCATCGTCTCCTTCAGATAAGAAGATACGTGTATA 273
|||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||
Sbjct 234 CTCACTGTCTCTCTTCTCATACCTCTCATCGTCTTCTTCAGATAAGAAGATACGTGTATA 293
Query 274 GAGACGTTTTGAGGGTAGAAGATGGCTCGAAGCTAATGGATTGCTCTTTAATTCAGCCAT 333
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 294 GAGACGTTTTGAGGGTTGAAGATGGTTCTAAGCTAATGGATTGCTCTTTAATTCAGCCAT 353
Query 334 ACATAACGAACAGTTCAAAAGTTGTGTTCATCAATGAAAGACCTCAGTCTCGACAGTTTC 393
||| |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 354 ACACAACGAACAGTTCAAAAGTTGTGTTCATCAATGAACGGCCTCAGTCTCGACAATTTC 413
Query 394 GTGGTTCCGGTAACATTTGCATCACCTGCGACCGGAGTCTCCAGTCTCCTTACCTCTTCT 453
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 414 GTGGTTCCGGTAACATTTGTATCACCTGTGACCGGAGTCTCCAGTCTCCTTACCTCTTCT 473
Query 454 GCTCTCTCTCCTGCAAGATTAGTGACGTCATAATGAGACAAAGAGGACTCGCAGGGTTTC 513
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 474 GCTGTCTCTCCTGCAAGATTAGTGACGTCATAATGAGACAAAGAGGACTCTCAGGGTTTC 533
Query 514 TCCGCGTCTGCAACGTTCTTGATTTAACCGACGAAGTCACGACAACGACGCCGAGTTCCA 573
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 534 TCCGCGTCTGCAACGTTCTTGATTTAACCGACGAAGTCACGACAACGACACCGAGTTCCA 593
Query 574 CTCTCGAACCAACCGGGTCGACCCGAACAACTTCCGAGTCA-GCTGGTAACG--G-AGAA 629
||||||| || |||||||||| ||||||| ||||||||||| | |||||||| | ||||
Sbjct 594 CTCTCGAGCCCACCGGGTCGAACCGAACATCTTCCGAGTCAAG-TGGTAACGAAGGAGAA 652
Query 630 GACATGTTCTGGTGTCAGGCGCTCGCTTGCACCGCCACTACTGAAATCGTTCGGAAGAAA 689
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 653 GACATGTTCTGGTGTCAGGCGCTCGCTTGCACCGCCACTACTGAAATCGTTAGGAAGAAA 712
Query 690 AGAAGCAGCTTGTCGACGACTTGCCGGAGAGTCACGGAGGTGGTTTCAACGACTGACACG 749
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 713 AGAAGCAGCTTGTCGACGACTTGCAGGAGAGTCACGGAGGTGGTTTCAACGACTAACACG 772
Query 750 GAAGCTCCGGTGAACTTTTTAAACCGACGGAAGAATACGCCGCCGCAACGAGCTCCGCTC 809
|||||||||||||||||||||||||| ||||||||| | | ||||||||| || |||||
Sbjct 773 GAAGCTCCGGTGAACTTTTTAAACCGTCGGAAGAAT-C-C-GCCGCAACGCGCCCCGCTT 829
Query 810 TATTAACTCGTGACATTTGGTGAAATTTGGTTGGTCGAAGTTGGTAAGTAGAATGAATAC 869
|||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 830 TATTAACTCGTGACGTTTGGCGAAATTTGGTTGGTCCAAGT-GGTAAGTAGAATGAATAC 888
Query 870 ACGTAAACTACTATAGTCTATATTTTATATTGTTAATCAATATCTCTAAATATCGAATCG 929
|||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 889 ACGTAA-CTACTATAGTCT-TATTTTATATTGTTAATCAATATCTCTAAATAACGAATCG 946
Query 930 AATTTTTAGGTTTTTAAGAAAATGAAATCATGGAATTAA-AATAGTTGAAAAGATCTCTC 988
|||||| |||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 947 AATTTT-AGGTTTTTTT-AA---GAAAT---GGAATTAAGAATAGTTGAAAAGATCTCTC 998
Query 989 CTGGTTTTGTCTGACTCTG 1007
|||||||||||||||||||
Sbjct 999 CTGGTTTTGTCTGACTCTG 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49329932354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5