BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486542
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60690.1 | Symbols: | SAUR-like auxin-responsive protein fa... 931 0.0
> AT3G60690.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:22435121-22435949 FORWARD LENGTH=829
Length=829
Score = 931 bits (504), Expect = 0.0
Identities = 627/683 (92%), Gaps = 22/683 (3%)
Strand=Plus/Plus
Query 22 AAACGATTCTGTTCAAAACATTTTTCAATCTCTCTTACTTTGTTTTGTCAACGATGAGGA 81
||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 89 AAACGGTTCTGTTCAAAACATTTTTCAAGCTCTGTTACTTTGTTTTTTCAACGATGAGGA 148
Query 82 GGTTAAGAGGAATCAAGATTAGAAGACCGATTCAACGAATCTCAAGATGGATCCTCCGGA 141
||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 149 AGTTAAGAGGAATCAAAATTAGAAGACCGATTAAACAAATCTCAAGATGGATCCTCCGGA 208
Query 142 GAATTCGGA-TC--CG-T--AGATACACCCGGTTAAGCCCGAACCGACCGGTTTGCAAGC 195
||||| || || || | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 209 GAATTAAGATTCGTCGTTCAAGATACACCCGGTTAAGCCCAAACCGCCCGGTTTGCAAGC 268
Query 196 CGAGAGCCATCACAAAGCTAATAAGTTGGGGTCGAAGTCTCACATCCCACAGCGCCAGGT 255
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CGAGAGCCATCACAAAACTCATAAGTTGGGGTCGAAGTCTCACATCCCACAGCGCCAGGT 328
Query 256 TTCTTGGTTCTAAATGTTTAAATCCAGGATACATACCAATTGGTCAAGAACCGATTCGAG 315
|| |||| |||||||| | ||| |||| ||||||||||||||||||||||| |||||||
Sbjct 329 TTATTGGGTCTAAATGCTCCAATTCAGGGTACATACCAATTGGTCAAGAACCCATTCGAG 388
Query 316 CAAAA-CCCGACCCGGTTCCGAAAGGTCACTCGGCGGTTTACATCGGTAAAAAAGACGGC 374
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 -AAAAGCCCGACCCGGTTCCGAAAGGTCACTCGGCGGTTTACATCGGTAAAAAAGACGGC 447
Query 375 GACTTTCAGAGAGTTTTGGTGCCTATCGTTTACTTTAACCATCCTCTGTTCGGTGAGCTT 434
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 448 GACTTTCAGAGAGTTTTGGTGCCTATCGTTTACTTTAACCATCCTCTGTTTGGTGAGCTT 507
Query 435 CTGAGAGAGGCAGAAGAAGAATTTGGGTTTTGC-CAAGAAGGTGGAATCACTATCCCTTG 493
|| |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 508 CTTAGAGAGGCTGAAGAAGAATTTGGGTTTT-CTCAAGAAGGTGGAATCACTATCCCTTG 566
Query 494 TCCTTATTCAGATTTCAAACGGGTCCAAACCCGAATTGAATCCGGGTCGGGTTTCTGTAA 553
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TCCTTACTCAGATTTCAAACGGGTCCAAACCCGAATTGAATCCGGGTCGGGTTTCTGTAA 626
Query 554 ACTTCCCTGGAGCCGGCGCCGGCAATAACGACGGTGG--GAAGAAGATGATGATGAAAAA 611
| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 627 ATTTCCCTGGAGCCGGCGGTGGCAATAACGACGGTGGAAGAAGATGATGATGATGAAAAA 686
Query 612 GTTAATTAACTcttttt-actattttctacctttgtcaccttttcacttttgtcactctt 670
||| |||||||||||| |||||||||||||||| |||| |||| || ||| ||
Sbjct 687 GTTCTTTAACTCTTTTTTACTATTTTCTACCTTT-TCAC-TTTTG--TT-----ACTATT 737
Query 671 tttacccttttGTTAGATATGTA 693
|||||||||||||||||||||||
Sbjct 738 TTTACCCTTTTGTTAGATATGTA 760
Score = 69.4 bits (37), Expect = 4e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 694 AATTTAGGCGATAATGTAAATAATATAGAGATTTTTT 730
|||||||||||||||||||||||||||||||||||||
Sbjct 790 AATTTAGGCGATAATGTAAATAATATAGAGATTTTTT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5