BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486543

Length=798
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60710.1 | Symbols:  | F-box family protein | chr3:22440198-...   309    3e-83


> AT3G60710.1 | Symbols:  | F-box family protein | chr3:22440198-22441472 
FORWARD LENGTH=963
Length=963

 Score =  309 bits (167),  Expect = 3e-83
 Identities = 262/305 (86%), Gaps = 18/305 (6%)
 Strand=Plus/Plus

Query  8    TGGAAGATTTGATAAGCCAACTGCCCAATGAGTTGCTGCACGAGATACTCTTGAATCTTC  67
            |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct  2    TGGAAGATTTGATAAGCCAATTGCCCAATGAGTTGCTGCAAGAGATACTCTTGAATCTTC  61

Query  68   CCACGAGTGAGTCTGTTAGGACAAGTGTCTTATCGACCAGATGGAGAAATCTCTGGCAAA  127
            |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  62   CCACGAGTGAGTCTGTTAGGACAAGTGTCTTACCGACAAGATGGAGAAATCTCTGGCAAA  121

Query  128  GTGTTCCTGGATTGTTGTTGAC--C-CGTG-GAATTC--AACATTTTGCGA--TTAACGG  179
            |||||||||| ||||   | |   | ||   || |||  || |||| |  |  ||  || 
Sbjct  122  GTGTTCCTGGTTTGTACCTAATTTCTCGACAGA-TTCTTAA-ATTT-GTAAACTTG-CG-  176

Query  180  TTCT---ATTGATGTGGTTCTAGAGATGCTTATCTCATGCTCTCCAGTTCTTCAAGTCTT  236
            | |    | ||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  177  TACACCGAGTGATGTGGTTCTAGAGATGCTTATCTCGTGCTCTCCTGTTCTTCAAGTCTT  236

Query  237  GAGCATTTATAATATCGGAGTGGAACTTTT-GAAAGTGCGATCTCAGACGTTAAGGAGCT  295
            |||||||| | || | ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct  237  GAGCATTTGTGATGTTGGAGTTGA-CTTTTTGAAAGTGCGATCTCAGACGTTAAGGAGCT  295

Query  296  TGAGT  300
            |||||
Sbjct  296  TGAGT  300


 Score =  200 bits (108),  Expect = 2e-50
 Identities = 125/133 (94%), Gaps = 2/133 (2%)
 Strand=Plus/Plus

Query  459  AGATGTTGCCTGTATATCTCTCTCCAGCTGTCCCAACCTAAAATCTATAGACTTGGAGCT  518
            ||||||||||  ||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct  560  AGATGTTGCC--TATATATCTCTCCAGCAGTCCCAACCTAAAATCTATTGACTTGGAGCT  617

Query  519  TCATGGTTATCCAAAGATGGAGGAAATTGCAAGCTCACCTGTGCCACAATGTCTCAAAAC  578
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct  618  TCATGGTTATCCAAAGATGGAGGAAATTGCAAGCTCACCAGTGCCAAAATGTCTCCAAAC  677

Query  579  ATCCATTGAGAAT  591
            |||||||||||||
Sbjct  678  ATCCATTGAGAAT  690


 Score =  145 bits (78),  Expect = 8e-34
 Identities = 101/111 (91%), Gaps = 6/111 (5%)
 Strand=Plus/Plus

Query  594  AAGCCGAAAAGCTGAAACAGAGTTTGCTAACTACATCTTAGAGAATGCAACACTTCTCAA  653
            |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||   
Sbjct  729  AAGCCGAAAAGCTGAAACCGAGGTTGCTAACTACATCTTAGAGAATGCAACACTTCT---  785

Query  654  GAAGCTCACTCTATGGTTAGATGAAGAAGAA-AA--CGAGTGTAGCAGCGT  701
            |||||||||||||||||||||||| |||||| ||  ||||| |||||||||
Sbjct  786  GAAGCTCACTCTATGGTTAGATGATGAAGAAGAAGACGAGTCTAGCAGCGT  836



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38830995631


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5