BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486544
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60720.1 | Symbols: PDLP8 | plasmodesmata-located protein 8 ... 1576 0.0
> AT3G60720.1 | Symbols: PDLP8 | plasmodesmata-located protein
8 | chr3:22441771-22443771 FORWARD LENGTH=1267
Length=1267
Score = 1576 bits (853), Expect = 0.0
Identities = 1033/1112 (93%), Gaps = 43/1112 (4%)
Strand=Plus/Plus
Query 1 TTCGTTACAAGTGAATGTTCTAGACCAGGCTTGTTGATCTATTATCTAGTTTTAGT-TTC 59
||||||||||||||||||||||||||| | ||||||||||||||| ||||||| || |||
Sbjct 1 TTCGTTACAAGTGAATGTTCTAGACCACGTTTGTTGATCTATTATGTAGTTTT-GTATTC 59
Query 60 ATTCAT-CCTAC----AT-T-TATCCACTTATTTCATAACTACAGTATG---TATACATG 109
| || | |||| || | |||||||||||||| ||||||| ||||| ||||||||
Sbjct 60 A-TCCTAGCTACATTTATATATATCCACTTATTTCTTAACTACGGTATGCATTATACATG 118
Query 110 TTTGTATTAATGTC-CCAGTTATACAA--TTCGGTCCCATAGTGATGAGCCTAATCATTC 166
|||||||||||||| || | ||| || ||||| ||||||||||||| |||||||||
Sbjct 119 TTTGTATTAATGTCGCC-G--ATAAAAGTTTCGGACCCATAGTGATGA--ATAATCATTC 173
Query 167 TCGATAACTATT-TTAAAATAAAACACT---ATGAATAAGATACAT-AGAAAACGAAAGC 221
||||| | |||| || |||||||||||| | |||||||||| || | |||||||||||
Sbjct 174 TCGATTATTATTGTT-AAATAAAACACTACAAGGAATAAGATAGATCA-AAAACGAAAGC 231
Query 222 TCATTTGAAAACAATCTCAAAGAACAA-AAAATATGAGAAGActctttctctcctctttc 280
|| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct 232 TCCTTTGAAAACAATCTCAAAGAACAAGAAAATATGAGAAGACTCTTTCTCT--TCTCTC 289
Query 281 ttcct-ttttctcttcttttactcatcatcctcctcaagatcttcatcaGAATCTCACAT 339
|||| |||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 290 -TCCTCTTTT-TATTCTTTTACTCATCCTCCTCCTCAAGATCTTCATCAGAATCTCACAT 347
Query 340 CTTCATCTACGGAGGATGTTCACCGGAAAAATACACACCAAACACACCTTTTGAATCAAA 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 348 CTTCATCTACGGAGGATGTTCACCGGAAAAATACACACCAAACACACCTTTTGAGTCAAA 407
Query 400 CCGTGATACTTTCCTCTCCTCTGTCATCACTTCCTCCTCTGACGCGTCCTTCAACAGCTT 459
||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 408 CCGCGACACTTTCCTCTCCTCTGTCGTCACTTCCTCCTCTGACGCGTCCTTCAACAGCTT 467
Query 460 TGCCGTCGGCAACGA------CTCCT-C-C-TCCTCTTCCGCCGTCTTCGGCCTCTATCA 510
||||||||||||||| ||||| | | |||||||||||||||||||||||||||||
Sbjct 468 TGCCGTCGGCAACGACTCCTCCTCCTCCTCATCCTCTTCCGCCGTCTTCGGCCTCTATCA 527
Query 511 ATGCCGTGACGATCTCCGATCATCAGACTGCTCAAAATGCATCCAAACCTCAGTCGATCA 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 ATGCCGTGACGATCTCCGATCATCAGACTGCTCAAAATGCATCCAAACCTCAGTCGATCA 587
Query 571 AATCACTCTCATTTGTCCTTACTCTTACGGCGCTTCTCTCCAGCTCGAAGGCTGCTTCTT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AATCACTCTCATTTGTCCTTACTCTTACGGCGCTTCTCTCCAGCTCGAAGGCTGCTTCTT 647
Query 631 ACGTTACGAGACCAACGACTTTCTTGGGAAACCAGATACGAGTCTTAGGTACAAAAAGTG 690
||||||||| || ||||| ||||| ||||||||||| || |||||||||||||| |||||
Sbjct 648 ACGTTACGAAACAAACGATTTTCTAGGGAAACCAGACACAAGTCTTAGGTACAAGAAGTG 707
Query 691 TAGTTCAAAGAGCGTTGAGAATGACTACGATTTCTTTAAACGGAGAGACGATGTGTTGTC 750
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 708 TAGTTCCAAGAGCGTTGAGAATGACTACGATTTCTTTAAGCGGAGAGACGATGTGTTGTC 767
Query 751 GGATCTTGAGTCGACTCAACTCGGTTACAAAGTTAGCCGGTCCGGTTTAGTCGAGGGTTA 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 GGATCTTGAGTCGACTCAACTCGGTTACAAAGTTAGCCGGTCCGGTTTAGTCGAAGGTTA 827
Query 811 TGCTCAGTGTGTTGGTGACTTGAGTCCTAGTGACTGTACGGCTTGTCTTGCGGAGTCTGT 870
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 828 TGCTCAGTGTGTTGGTGACTTGAGTCCTAGTGACTGTACGGCTTGTCTTGCCGAGTCTGT 887
Query 871 CGGGAAATTAAAGAATCTTTGTGGCTCGGCGGTTGCAGCTGAGGTTTACTTGGCTCAGTG 930
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CGGAAAATTAAAGAATCTTTGTGGCTCGGCGGTTGCAGCTGAGGTTTACTTGGCTCAGTG 947
Query 931 CTATGCTCGTTATTGGGGTTCTGGTTACTATGACTTCTCTTCAGATCCAACGAACGGAGA 990
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 948 CTATGCTCGTTATTGGGGCTCTGGTTACTATGACTTCTCTTCAGATCCAACGAATGGAGA 1007
Query 991 TCACGTGGGGAAATCAATCGCGATCATCGTAGGAGTCATTGCTGGATTCGCAATTCTTGT 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TCACGTGGGGAAATCAATCGCGATCATCGTAGGAGTCATTGCTGGATTCGCAATTCTTGT 1067
Query 1051 TGTTCTCCTCTCCCTTTGTAGAAACTCCATGC 1082
||||||||||||||||||||||||||||||||
Sbjct 1068 TGTTCTCCTCTCCCTTTGTAGAAACTCCATGC 1099
Score = 191 bits (103), Expect = 2e-47
Identities = 154/178 (87%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 1113 CATGCATTGATATAAAGAAAGACATGATTCGGGATAAAAGATTCTAGGGACCTAtttttt 1172
||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||
Sbjct 1095 CATGCATTGATATAATGAAAGGCATGATTCGGGATACAAGATTCTAGGGACCT-GTTTTT 1153
Query 1173 tttttttttttttttGGGGGACTCTCTTGTTATTCCTTTTATTTTGTAGGAGGAACACAT 1232
|||||||| | | | | | || ||||||||||||||||||||||||||||||
Sbjct 1154 TTTTTTTTGAACTCTCTTGTA-T-TC-CACTATTCCTTTTATTTTGTAGGAGGAACACAT 1210
Query 1233 CCGTTACCGTTCCTTACTGAATTTTTTGGTTTATCAAAAAAGAAAACTATTAGTGACT 1290
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1211 CCGTTACCGTTCCTTGCTGAAATTTTTGGTTTATCAAAAG-GAAAACTATTAGTGACT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5