BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486545
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60730.1 | Symbols: | Plant invertase/pectin methylesterase... 2495 0.0
> AT3G60730.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:22444890-22447273 FORWARD LENGTH=1672
Length=1672
Score = 2495 bits (1351), Expect = 0.0
Identities = 1561/1663 (94%), Gaps = 11/1663 (1%)
Strand=Plus/Plus
Query 1 ACTTAAAACGCATTTCAAGAAAATTACTAAAACACTACAACAATCTTATAATAACATCTA 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1 ACTTAAAACGCATTTCAAGAAAATTACT-AAACACTACAACAATCTTATAATAACATTTA 59
Query 61 CTAAAAATGTACACGTTTGTAAAAGTAACCGACTTAATCACCATCATGTTCTTGCTAGCC 120
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 60 CTAAAAATGTCCACGTTTGTAAAAGTCACCGACTTAATCACTATCATGTTCTTTCTAGCC 119
Query 121 ATTGCAGCCGTCGTAACCGCCTCAAACACAGCCGAATTGGATGTACTTGAGATGGCTCGA 180
||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 120 ATTGCTGCCGTCATAACCGCCTCAAACACAGCCGAGTTGGATGTACTTGAAATGGCTAGA 179
Query 181 ACAGCTGTGGTTGAAGCCCGGGCTAGTTTTGGGTCAGTGGCTGTGGTTGAGGCAACGAGT 240
|| ||||||||||||||| | |||||||||||||| |||||||| ||||||||| |||
Sbjct 180 ACTGCTGTGGTTGAAGCCAAGACTAGTTTTGGGTCAATGGCTGTGACTGAGGCAACTAGT 239
Query 241 GAAGTTGCTACTAGTAGTTATTATAATTTGGGATTAAGTGAATGTGAAAAGCTCTACGAT 300
||||||| || ||||||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct 240 GAAGTTG---CTGGTAGTTATTATAAATTGGGGTTAAGTGAATGCGAGAAGCTCTACGAT 296
Query 301 GTGAGTGAAGCTAGGCTATCGAAACTTGTCGTGGCTCATGAGAATTTTACCGTTGAAGAT 360
| |||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||||
Sbjct 297 GAGAGTGAAGCTAGGCTATCGAAACTGGTCGTAGATCATGAGAATTTCACCGTTGAAGAT 356
Query 361 GTTAGAACGTGGCTAAGTGGCGTGCTTGCGAACCATCACACTTGTTTAGACGGTTTGGTT 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 357 GTTAGAACGTGGCTAAGTGGCGTGCTTGCGAATCATCACACTTGTTTAGACGGTTTAATT 416
Query 421 CAGCAACGTGAAGGTCATAAGCCTTTGGTCCATAGCAACGTCACGTTCGTGCTCCATGAA 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAGCAACGTCAAGGTCATAAGCCTTTGGTCCATAGCAACGTCACGTTCGTGCTCCATGAA 476
Query 481 GCTTTGGCTTTCTATAAAAAGTCTAGAGGTCATATGAAAAAGACGCTCCATGGACCAGCT 540
|||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 477 GCTTTGGCTTTCTACAAAAAGTCTAGAGGTCATATGAAAAAGAGGCTGCATGGACCAGCG 536
Query 541 AGAGAGAACCATGGACCTGAA--AGACCAAAACATGGACCAACGAGATCAAATCATGGAC 598
||| || ||||||||| || |||||||||||| ||||||||||| ||||||||||||
Sbjct 537 AGACAGGGCCATGGACC--AACGAGACCAAAACATAGACCAACGAGACCAAATCATGGAC 594
Query 599 CAGGACGACCAAACCATGAACCATCGAGACCAAACCAAAGCGGTGGAATGTTAGTGTCAT 658
||||| || || |||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 595 CAGGAAGATCACACCATGGACCATCAAGACCAAACCAAAACGGTGGAATGTTAGTGTCAT 654
Query 659 GGAATCCAACAAGTTCAAGGGCAGATTTCGTGGTGGCTCAGGACGGTTCGGGGACTCATC 718
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 655 GGAATCCAACAAGTTCAAGGGCAGATTTCGTGGTGGCTCGGGACGGTTCGGCGACTCATC 714
Query 719 GGACGATAAACCAAGCGTTAGCCGCCGTTTCAAGAATGGGTAAAAGTCGGTTGAATAGAG 778
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GGACGATAAACCAAGCATTAGCCGCCGTTTCAAGAATGGGTAAAAGTCGGTTGAATAGAG 774
Query 779 TGATAATCTACATAAAAGCTGGTGTTTATAACGAAAAAGTCGATATAGATAGACACATGA 838
||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 775 TGATAATATACATAAAAGCTGGTGTTTATAACGAAAAAATCGAAATAGATAGACACATGA 834
Query 839 AAAACATCATGCTAGTTGGTGATGGTATGGACCGTACAATCGTCACCAATAACCGAAACG 898
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 835 AAAACATCATGCTAGTTGGTGATGGTATGGACCGTACAATTGTCACCAATAACCGAAACG 894
Query 899 TCCCGGATGGTTCCACGACTTATGGATCAGCGACATTTGGAGTGTCCGGGGATGGATTTT 958
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 895 TCCCGGACGGTTCCACGACTTATGGATCAGCGACATTCGGAGTGTCCGGGGATGGATTTT 954
Query 959 GGGCGCGGGACATGACATTCGAGAACACTGCAGGACCACATAAACACCAAGCTGTGGCGT 1018
|||| |||||||| || |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 955 GGGCACGGGACATAACGTTCGAGAATACTGCAGGACCACATAAACATCAAGCTGTGGCGT 1014
Query 1019 TGAGAGTGAGCTCGGACTTGTCTTTATTCTATCGTTGTAGTTTCAAAGGATATCAAGATA 1078
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1015 TGAGAGTGAGCTCAGACTTGTCTTTATTCTATCGGTGTAGTTTCAAAGGATATCAAGATA 1074
Query 1079 CTCTTTTCACCCACTCACTTCGTCAATTCTACCGAGATTGTCATATTTATGGTACGATTG 1138
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1075 CTCTTTTCACGCACTCACTTCGTCAATTCTACCGCGATTGTCATATTTATGGTACGATTG 1134
Query 1139 ATTTCATATTTGGAGATGCGACAGCTGTTTTTCAGAACTGTGATATATTTGTGAGACGGC 1198
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1135 ATTTCATATTTGGAGATGCGGCAGCTGTTTTTCAGAACTGTGATATATTTGTGAGGCGGC 1194
Query 1199 CTATGGATCATCAAGGCAATATGATCACAGCTCAAGGGAGAGACGACCCACATTCAAATT 1258
||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1195 CTATGGATCATCAAGGCAACATGATCACAGCTCAAGGAAGAGACGACCCACATACAAATT 1254
Query 1259 CAGGCATTTCGATCCAACATTCACGGATCAGGGCCGCACCAGAATTCGAGGCGGTTAAAG 1318
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1255 CAGGCATTTCGATCCAACACTCACGGATCAGGGCCGCACCAGAATTCGAAGCAGTTAAAG 1314
Query 1319 GCCGGTTTAAGAGCTACTTGGGCCGGCCATGGAAGAAGTACTCACGGACAGTGCTTCTCA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1315 GCCGGTTTAAGAGCTACTTGGGCCGGCCATGGAAGAAGTACTCACGGACAGTGTTTCTCA 1374
Query 1379 AAACGGATATCGACGAGTTGATTGACCCGAGAGGGTGGAGAGAATGGAGTGGCAGTTATG 1438
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AAACAGATATCGACGAGTTGATTGACCCGAGAGGGTGGAGAGAATGGAGTGGCAGTTATG 1434
Query 1439 CTCTGTCAACGTTGTATTACGGCGAGTTTATGAACACCGGAGCTGGAGCAGGGACAAGCC 1498
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1435 CTTTGTCGACGTTGTATTACGGCGAGTTTATGAACACCGGAGCTGGAGCAGGGACTGGTA 1494
Query 1499 GAAGGGTGAACTGGCCGGGATTTCACGTCCTTCGCGGCCAGGAGGAGGCTTCTCCGTTCA 1558
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |
Sbjct 1495 GAAGGGTGAACTGGCCGGGATTTCACGTCCTACGCGGTGAGGAAGAGGCTTCTCCGTTTA 1554
Query 1559 CGGTCAGCCGATTCATTCAAGGAGATTCTTGGATCCCTATCACCGGTGTGCCGTTTTCAG 1618
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCGTCAGCCGATTCATACAAGGAGATTCTTGGATCCCTATCACCGGTGTGCCGTTTTCAG 1614
Query 1619 CCGGGGTTTGAGTCACTTTTGACTCTTGAATGAATCATCAACA 1661
| |||||||||||||||||||| | |||| |||||||||||
Sbjct 1615 CTGGGGTTTGAGTCACTTTTGAAT---GAATAAATCATCAACA 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5