BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486550
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60780.1 | Symbols: | Protein of unknown function (DUF1442)... 1230 0.0
> AT3G60780.1 | Symbols: | Protein of unknown function (DUF1442)
| chr3:22462657-22463785 FORWARD LENGTH=850
Length=850
Score = 1230 bits (666), Expect = 0.0
Identities = 795/856 (93%), Gaps = 14/856 (2%)
Strand=Plus/Plus
Query 1 AAACATTTTTATCAAGATATTAACACAAGAATACGATCATGAAGCTCGTCTGGTCACCGG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1 AAACATTTTTATCAAGATATTAACACAAGAATACGATCATGAGGCTCGTCTGGTCGCCGG 60
Query 61 AAACAGCATCCAACGCTTACATCCACACCGTTAGATCATGTAAAAGCTACAGAGAATCGA 120
|||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AAACTGCCTCTAACGCTTACATCCACACCGTTAGATCATGTAAAAGCTACAGAGACTCGA 120
Query 121 GTGTAGCGGAGTTCTTATCGGCTACGGCGGCGGGATGGAACACTAAGCTGATCGTCGAGA 180
| || |||||||| ||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 121 GCGTGGCGGAGTTTTTATCGGCTACGGCGGCGGGATGGAACACGAGGCTGATCGTTGAGA 180
Query 181 CTTGGTCACGTGGAGATCCGATTGCCACCAGCGTCGGACTCGCCGTCGCGGCGATACACA 240
|||||||||||||||||||||| || || ||||||||||||||||| || ||||||||||
Sbjct 181 CTTGGTCACGTGGAGATCCGATCGCAACTAGCGTCGGACTCGCCGTGGCAGCGATACACA 240
Query 241 CATGTGGAAGACACGTGTGCATAGTTCCTGACGAAGAGTCAAGGTCGGAGTACGAGGCGG 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CATGTGGAAGACACGTGTGCATAGTTCCTGACGAAGAGTCGAGGTCGGAGTACGAGGCGG 300
Query 301 TGATGAAAGGAGCCATTAAC-AGTGAATCAACGGAAGTTATGGTTTTAGATTCGGCGGAG 359
|||||| ||||||| || || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 301 TGATGAGAGGAGCCGTT-ACGAGTGACTCAACGGAGGTTATGGTCTTAGACTCGGCGGAG 359
Query 360 GACGTGGTGGAGAGAATCTCCGGCGTGGATTTCATGGTGGTTGATTCGAAACGCCGCGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 GACGTGGTGGAGAGAATCTCCGGCGTGGATTTCATGGTGGTTGATTCGAAACGCCACGAG 419
Query 420 TTCGTAAAGGCGTTGGGATTAGCGAAAACGAGTAAAATGGGCGCCGTTTTGGTGTGTAAA 479
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 TTCGTAAACGCGTTGGGATTAGCGAAAACGAGCAAAATGGGCGCCGTTTTGGTGTGTAAA 479
Query 480 AACGCCACGCAGAAATCTATCCCTGGGTTTAAATGGCACGGTGTTTTGAGACGAGGCACA 539
|||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 480 AACGCCACGCTGAAATCTATCCCTGGGTTTAAATGGCAAGGTCTTTTGAGACGAGGTACA 539
Query 540 CGTGTCGTGAGGTCGGTGTTCTTACCCGTCGGGAGAGGATTAGAAATCGCACACGTGGGA 599
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 540 CGTGTCGTGAGATCGGTGTTCTTACCCGTCGGGAGAGGATTAGAGATCGTACACGTGGGA 599
Query 600 GCCAGTGGTGGTGGTAATGATTTGAAGAAGATTCCTAGCCGTTGGATTAAACACATTGAT 659
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 600 GCCAGTGGTGGTGGTAATGGTTTGAGGAAGATTCCTAGCCGTTGGATTAAACACATAGAT 659
Query 660 CCTCTATCTGGAGAGGAACACTTGTTTAAGCGTTAGTCAACGttttttttttttttCCTT 719
|||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 660 CCTCGATCTGGAGAGGAACACTTGTTTAAGCGTTAGTCAACGTTTTTGTTTTC---CCTT 716
Query 720 T-AATAAAAAACA-TGCCATGTATTTTT-CCATAACAGTTACCATTTCTAATCATGTAAT 776
| ||| ||||||| || ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 717 TTAATCAAAAACAATGTCATGTATTTTTTCCATAACAATTACCATTTCTAATCATGTAAT 776
Query 777 ATATAGAAAGGAATCTCGCCA-AGTCAAGAA-T--TTGGATGATTTGTTTCCAAATGTAT 832
| ||||||| |||| || ||| | ||||||| | |||| ||||||||||||||||||||
Sbjct 777 AGATAGAAAAGAATATCACCACA-TCAAGAAGTAATTGG-TGATTTGTTTCCAAATGTAT 834
Query 833 AGCTTCCTTTTGCTTC 848
||||||||||||||||
Sbjct 835 AGCTTCCTTTTGCTTC 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5