BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486551
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60790.1 | Symbols: | F-box family protein | chr3:22464623-... 1753 0.0
> AT3G60790.1 | Symbols: | F-box family protein | chr3:22464623-22466948
FORWARD LENGTH=1467
Length=1467
Score = 1753 bits (949), Expect = 0.0
Identities = 1308/1479 (88%), Gaps = 34/1479 (2%)
Strand=Plus/Plus
Query 18 atcatcatcatcatcatcaccattatcgtcgtccccatcatcaacaccaccaccattatc 77
||||||||||||||||||| |||| | ||||| | ||||||||||||||||| |||| |
Sbjct 12 ATCATCATCATCATCATCATCATTGCCCTCGTCACTATCATCAACACCACCACTATTAGC 71
Query 78 atcaAATGCAAGAGGCAAACTTTTATGGACAGGATCATCATCTAAACCAAAAGGAAAAAG 137
||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||||||| |
Sbjct 72 ATCAAATGCAAGATGCAAAGTTTTAAGGACAGGAGCATCATCTAAAGGAAAAGGAAAAGG 131
Query 138 GATCCAATATCCGGTCGATAATGTCGATCGGATAAGCATGCTTCCGGATGAATTGTTACA 197
|||| ||||| | || |||||||||||||||||||||||||||||| |||||||
Sbjct 132 GATCAAATAT-C---CG-----GTCGATCGGATAAGCATGCTTCCGGATGAAATGTTACA 182
Query 198 AAAGATCCTTTCGACACTATCGACTAAAGATGCCGTGAAAACAAGCACCTTGTCGAAAAG 257
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 183 AAAGATCCTTTCGACACTATCAACTAAAGATGCCGTGATAACAAGCACCTTGTCGAAAAG 242
Query 258 ATGGGTGGATCAGTGGAAGTGGAGACCACATCTCTCCGTGGGCATGAGAAATATT-TCGA 316
||||||||||||||||||| | | ||||||||||| ||||| ||||||||||||| | ||
Sbjct 243 ATGGGTGGATCAGTGGAAGCGCATACCACATCTCTGCGTGGACATGAGAAATATTAT-GA 301
Query 317 GAACAAACCCGACGAGCCGTCTTCGTGAAATATCTCTCCGCGTTGCTGAATCAATGACGA 376
||||||||||||| ||| | ||| |||| ||||| ||||| ||||||||||||||||||
Sbjct 302 GAACAAACCCGACCAGCTATGTTCATGAATTATCTTTCCGCTTTGCTGAATCAATGACGA 361
Query 377 GGACTATAAACAATCATCGTGGCCGCCTAGAGAGCTGCACAATCAGCCATATTTTA-TTC 435
|||| |||||||||||||||| | ||||||||||||||||||||||||| || | ||
Sbjct 362 AGACTTTAAACAATCATCGTGGTCATCTAGAGAGCTGCACAATCAGCCATA-TTCAGTT- 419
Query 436 CAATGTAAAGATGGTACGCTCGATAGGTGGGTCCAAACAGTGACTCATGAGAAACAAACC 495
| || | | || | ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 420 C-AT-T--TTTTTGTTC-ATCGATAGGTGGATCCAAACAGTGACTCGTGAGAAACAAACC 474
Query 496 AAAGAGCTCACTCTTGTCAACTATATAGGTTGCATGGGACCTTTCGGTGGATATAATAGG 555
|| ||| | |||||||||||| |||||||||||||| |||||| | | ||||||||||
Sbjct 475 AAGGAGATTACTCTTGTCAACAATATAGGTTGCATGACACCTTTTGTTAGATATAATAGT 534
Query 556 CTTCACTTGTCCCCAAGTACATTCTCTCATCCTAGCCTCACTTCACTGTCACTTACTCGA 615
|||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 535 CTTCACTTGTCCCCAAGTGCATTCTGTCATCCTAGCCTCACTTCACTCTCACTTACTCGA 594
Query 616 TATAAGTTAAC-AGAGACAGCCTTCAATAACTGCTCCAATCTTAAGACCCTCAAGCTTTT 674
|||||||| || |||| ||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct 595 TATAAGTT-ACTCGAGAAAGCCTTCAAGAACTGCTGCAATCTTAAGATCCTGAAGCTTTA 653
Query 675 TGACATCATGTCCGATGTTAGTGTCCTTAGCAGA-GTTTTCAAAGCTTGCTCCTCTCTTG 733
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 654 TGACATCATGTCCGATGTTAGTGTCCTTAGCA-ACGTTATCAAAGCTTGCTCCTCTCTTG 712
Query 734 AGGTGCTTGTGTTGCAAATCACATGCTTAAAACTTGGATGTGTGTTGAAGATCGAGAACA 793
|||||||||||||||||||||||| |||||| | | | ||| |||||||||||| ||||
Sbjct 713 AGGTGCTTGTGTTGCAAATCACATTCTTAAACCAAGCAAGTGCGTTGAAGATCGAAAACA 772
Query 794 AGAATTTAGAAGTCTTGCAAGTGACTTGCCCTACTCTGATTAATAAGATGGAAGTGAATG 853
|||| |||||| |||||||||||||||| ||| |||||| |||| |||||||||||||
Sbjct 773 AGAAATTAGAATTCTTGCAAGTGACTTGGCCTTGTCTGATGAATAGGATGGAAGTGAATA 832
Query 854 CACCTCGTTTGGAGATTCTTGACATCAAATATATATATTGTGATAGCTTCTTACTTGATG 913
|||||||||||| |||| |||||||||||| ||| || ||| | ||| || | |||| |
Sbjct 833 CACCTCGTTTGGTGATTTTTGACATCAAATCTATCTACTGTTTTGGCTACTCAGTTGAAG 892
Query 914 CACCT-AA--AATCATGTTTAATAGAGATTATTGGTTTGGTGCGATTAGTGT-CCCTCAT 969
| ||| || || ||||||||| |||||||||||| |||||| ||| ||| | |||||||
Sbjct 893 CCCCTAAATTAAGCATGTTTAAAAGAGATTATTGGGTTGGTGGGATGAGT-TACCCTCAT 951
Query 970 ATTAGCTACCATATATCAAGTCTTGCTCAGGAGaaaaaaaGAATTTGGCTTGAGCTTTTG 1029
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 952 CTTAGCTACCATATATCAAGTCTCGCTCAGGAGAAAATAAGAATTTGGCTTGAGCTTATG 1011
Query 1030 GTGAGCCAATTTTATAATATGAAACGGTA-TGGATCCTTATCAGTGAGTGTCGACGTGAG 1088
||||||||| ||||| ||||||||||| | |||||||||||| ||||||||||| |||||
Sbjct 1012 GTGAGCCAAATTTATCATATGAAACGG-ACTGGATCCTTATCCGTGAGTGTCGATGTGAG 1070
Query 1089 AAATCCTAACGAACTCAAGATTTTGAAGGAAGTCTTACTTTTGTGGAATGAAGAAATGAA 1148
|||||| |||||| || ||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 1071 AAATCCGAACGAAGTCGAGATTTTGAAGGAAGTCTTACTTTTGTGGGATGGAGAGATGAT 1130
Query 1149 GGATCTGGAGATCATCTTCAAGAACAACAATGCTCCTAGGGAAGAAGGTGAATCTTCTAT 1208
||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1131 GGATCTGGAGATCCTCTTCAAGAACAACAATGCTCCTATAGAAGAAGGTGAATCTTTTAT 1190
Query 1209 CAATGGTGGAGCACGTAACAAATGGTTGGATGGTGAAAAACCATTTCCAGATGCTTTCTT 1268
| ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 1191 TACTGGTGGAGCACGTAACAAATGGTGGGATGGTGAAAAACCGTTTCCAGATGATTTCTT 1250
Query 1269 CCGCGTTCGTACTGTATGGATGTATAATTTTGATGGTTCCAATGAAGAGGAATTTGCATT 1328
||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1251 CCGCGTTTGTACTGTGTGGATGTATAATTTCGATGGTTCTAATGAAGAGGAATTTGCATT 1310
Query 1329 AGCTTCACGTTTTGTGACACAAGGAACAGTGATTGATAAGTTGATGATAGAGACATCGAC 1388
||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct 1311 AGCGTCACGTTTTGTGACACAAGGAACAGTGACTGAAAAGTTGATGATAAAGACATCGAC 1370
Query 1389 GTATCCTCCAGTGAAGCAGTTAATGACAGAAGCAAAAGTGGCCAAGCTAATGGAACTTCC 1448
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GTATCCTCCAGTGAAGCAATTAATGACAGAAGCAAAAGTGGCCAAGCTAATGGAACTTCC 1430
Query 1449 TAAAGGTAACGATTACTTT--ACTATCGAATGCTTTTGA 1485
||||||| |||| || ||| || || ||||||||||||
Sbjct 1431 TAAAGGTTACGAGTA-TTTGGAC-ATTGAATGCTTTTGA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5