BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486553
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60810.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1273 0.0
AT3G60820.1 | Symbols: PBF1 | N-terminal nucleophile aminohydro... 165 7e-40
> AT3G60810.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865);
Has 444 Blast hits to 444 proteins in 143 species: Archae
- 0; Bacteria - 268; Metazoa - 0; Fungi - 0; Plants -
51; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
| chr3:22470519-22471906 FORWARD LENGTH=855
Length=855
Score = 1273 bits (689), Expect = 0.0
Identities = 814/871 (93%), Gaps = 21/871 (2%)
Strand=Plus/Plus
Query 1 CAAActtcttcttcttcttcttcttACTCCAAAGAGTTAAGAGAAAATCCGAGCTAGTGA 60
|||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 CAAACTTCTTCTTCTTCTTC-TCTTACTCCAAAGAGTAAAGAG-AAATCCGAGCTAGTGA 58
Query 61 AGATGGCTTCCATGGCGTCACCGACCACTTGCTTGTACCACCACAACCACAAATGCCGGA 120
|||||||||||||||||||||||||||||||||||| | | | |||||||||||||||
Sbjct 59 AGATGGCTTCCATGGCGTCACCGACCACTTGCTTGT---A-C-C-ACCACAAATGCCGGA 112
Query 121 GAAAACTTGGTTCCGATGCCCGTCGTATTAGCGCCTCAATTTCAGAGAATCCAGATGACA 180
||||||||| || | ||||||||||||| || ||||| ||| |||||| | || ||||||
Sbjct 113 GAAAACTTGTTTTCTATGCCCGTCGTATCAGTGCCTCGATTCCAGAGACTTCATATGACA 172
Query 181 AACCTCCGAAGCTAATTGGTCGAAGAGAGATCATTCTTAGGAGCAGTGAATTAGCTATGA 240
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 173 AACATCCGAAGCTAATTGGTCGAAGAGATATCATTCTTAGGAGCAGTGAATTAGCTATGA 232
Query 241 TCGGAGCTATATTCCAGCTCAGTGGGAAAAAACCAGATTATCTAGGAGTGCAAAAGAACG 300
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 233 TCGGAGCCATATTCCAGCTTAGTGGGAAAAAACCAGATTATCTAGGAGTACAAAAGAACG 292
Query 301 AGAGATTGGCTCTATGTCCTGCCACTAATAACTGTATCTCCACTTCTGAGAATATCAGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGAGATTGGCTCTATGTCCTGCCACTAATAACTGTATCTCCACTTCTGAGAATATCAGTG 352
Query 361 ATCGAGTGCATTATGCTCCACCTTGGAACTATAATGGAGGAAGGAAAACACCTGTGAACA 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 353 ATCGAGTGCATTATGCTCCACCATGGAACTATAATGGAGGAAGGAAAACACCTGTGAACA 412
Query 421 GACAAGTTGCAATGAAAGAGCTTCTTAATGTGATTAAGTCGGTGAAACCTGACAAGTTTA 480
| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 413 GGCAAGTTGCAATGAAAGAGCTTCTTAATGTGATTAAGTCGGTGAAACCGGATAAATTTA 472
Query 481 CTCCTCGGATTGTGGAGAAGAAGGATGACTATGTTCATGTTGAATATGAAAGTCCAATCT 540
| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 473 CACCGCGGATTGTGGAGAAGAAGGATGACTACGTTCATGTGGAATATGAAAGTCCAATCT 532
Query 541 TAGGGTTAGTAGATGATGTTGAATTCTTGTTCACTCCTGGGAAGAACTCCAAAGTGGAAT 600
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 533 TGGGGTTAGTAGACGATGTTGAATTCTTGTTCACTCCTGGGAAGAACTCGAAAGTGGAAT 592
Query 601 ATCGATCTGCATCCCGTAAAGGGAACTTCGACTTTGATGTGAATAGAAAGCGAATAAAGG 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 ATCGATCTGCATCCCGTAAAGGGAACTTCGACTTTGATGTCAATAGAAAGCGAATAAAGG 652
Query 661 CATTGCGACAAGAGCTAGAGAAGAAGGGATGGGTATCAGAGAACAGCTTCTGAAGACACA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 653 CATTGCGACAAGAGCTAGAGAAGAAGGGATGGGTATCAGAGAACAGCTTCTGAAGA-A-A 710
Query 721 GAAGAGTTTCCAGATTCTAATCTTGTCTATTCAATATCTTAATGCGATGCCCTTGTGTAA 780
| |||||||||||||||| ||||||||||| |||||||||||| ||| | | |||||
Sbjct 711 -A-GAGTTTCCAGATTCTATTCTTGTCTATTAAATATCTTAATGTGAT-C--TA-TGTAA 764
Query 781 AAACATTGCCATACAT-G--AGAGAAACAGTGATTTAAGACAAGGATTCGAGTGATTCT- 836
||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||
Sbjct 765 AAACATTGCCATAAATAGTGAGAGAAACATTGATTTAAGACAAGGATTCGAGTGATTCTC 824
Query 837 -TACAAAAGGAAACAGTTTTGGAGAAACTTC 866
|||| |||||||||||||||||||||||||
Sbjct 825 ATACATAAGGAAACAGTTTTGGAGAAACTTC 855
> AT3G60820.1 | Symbols: PBF1 | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:22471769-22473939
REVERSE LENGTH=1071
Length=1071
Score = 165 bits (89), Expect = 7e-40
Identities = 126/142 (89%), Gaps = 9/142 (6%)
Strand=Plus/Minus
Query 730 CCAGATTCTAATCTTGTCTATTCAATATCTTAATGCGATGCCCTTGTGTAAAAACATTGC 789
|||||||||| ||||||||||| |||||||||||| ||| | | ||||||||||||||
Sbjct 1071 CCAGATTCTATTCTTGTCTATTAAATATCTTAATGTGAT---C-TATGTAAAAACATTGC 1016
Query 790 CAT--ACA-TGAGAGAAACAGTGATTTAAGACAAGGATTCGAGTGATTCT--TACAAAAG 844
||| | | ||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 1015 CATAAATAGTGAGAGAAACATTGATTTAAGACAAGGATTCGAGTGATTCTCATACATAAG 956
Query 845 GAAACAGTTTTGGAGAAACTTC 866
||||||||||||||||||||||
Sbjct 955 GAAACAGTTTTGGAGAAACTTC 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42246917627
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5