BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486557
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60830.1 | Symbols: ATARP7, ARP7 | actin-related protein 7 |... 1954 0.0
> AT3G60830.1 | Symbols: ATARP7, ARP7 | actin-related protein 7
| chr3:22474074-22476445 FORWARD LENGTH=1761
Length=1761
Score = 1954 bits (1058), Expect = 0.0
Identities = 1219/1293 (94%), Gaps = 26/1293 (2%)
Strand=Plus/Plus
Query 1 TCTTCGCATTTGTGGAAAGTTGTGAATTTAGGG-TTTTAGG-GTGTGTGTGAAAACGATG 58
|||| ||||||||||||||||| |||||||||| |||| || |||||||||||||| |||
Sbjct 168 TCTTGGCATTTGTGGAAAGTTGGGAATTTAGGGTTTTTGGGTGTGTGTGTGAAAACAATG 227
Query 59 GAAGCACTTGTTGTTGATGCTGGCTCTAAGCTCCTGAAAGCAGGAGCAGCAATTCCTGAC 118
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 228 GAAGCACTAGTTGTTGATGCTGGCTCTAAGTTCCTGAAAGCAGGAGCAGCAATTCCTGAC 287
Query 119 CAGTCTCCTGCGATGATTATTCCATCTCAAATGAAACGAATGGTTGATGATGGGTCTTCT 178
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 288 CAGTCTCCTGCAATGATAATTCCCTCTCAAATGAAACGAATGGTTGATGATGGGTCTTCT 347
Query 179 TCAGCTGATAACCCCACCACTGTCTTTGAGGATGTCACTCTTGATCCTATTGAACGGGGT 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 348 TCAGCTGATAACCCCACCACTGTCTTTGAGGATGTCACTCTTGATCCTATTGAAAGGGGT 407
Query 239 TTAATTAGAGATTGGGATGCTATGGAGGATTTGTTGCGTTATGTTGTCTACACTGGGCTT 298
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 408 TTGATTAGAGATTGGGATGCTATGGAAGATCTGTTGCGTTATGTTGTCTACACTGGGCTT 467
Query 299 GGATGGGAAGAGGGAAACGAAGGCAATATACTTTTCACAGATCCACTATGTACTCCTAAG 358
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 468 GGATGGGAAGAGGGAAACGAAGGCAATATACTTTTTACAGATCCACTTTGTACTCCTAAG 527
Query 359 GCTATTAGGGAACAATTGGTGCAATTGATGTTTGAAACATTCAATGTCTCTGGATTTTAT 418
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 528 GCTATTAGGGAGCAATTGGTGCAGTTGATGTTTGAAACATTCAATGTCTCTGGATTTTAT 587
Query 419 GCATCTGAGCAAGCAGTGTTGTCCCTTTATGCTGTTGGACGCATCTCCGGTTGCACTGTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GCATCTGAGCAAGCAGTGTTGTCCCTTTATGCTGTTGGACGCATCTCCGGTTGCACTGTT 647
Query 479 GATATTGGTCATGGGAAGATAGATATCGCCCCAGTTCTTGAAGGTGCCGTTCAACACATC 538
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 648 GATATTGGTCATGGGAAGATAGATATTGCCCCAGTTCTTGAAGGTGCAGTACAACACATT 707
Query 539 GCCTCGAAACGGTTTGAGCTAGGTGGAACAGAACTAACAAAATTATTTGCCCAAGAGCTT 598
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 708 GCCTCGAAACGGTTTGAGCTAGGTGGAACCGAGCTAACTAAATTATTTGCCCAAGAGCTT 767
Query 599 GGAAAATCCAACCCTTCGATGAATCTCAGCATGGCTGATGTTGAAAAACTGAAGGAGCAG 658
|||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 768 GGAAAAACCAACCCGTCGATGAATCTCAGCATGTCTGATGTTGAAAAACTCAAGGAGCAG 827
Query 659 TATGCAAACTGTGCCGAGGACGAAATTGCTTACGAGAAAACCCAAAACTGTGAAATCGAG 718
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 828 TATGCAAACTGTGCCGAGGACGAAATTGCTTACAAAAAAACCCAAAACTGTGAAATCGAG 887
Query 719 CAGCATACTCTTCCTGATGGACAGGTGATAAGCATCGGGCGAGAGAGATACTCTGTTGGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 888 CAGCATACTCTTCCTGATGGACAGGTGATAAGCATCGGGCGAGAGAGATACTCGGTTGGA 947
Query 779 GAAGCTTTGTTTCAGCCATCAATACTGGGACTGGAGGAGCACGGAATCGTTGAGCAGCTT 838
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 948 GAAGCTCTGTTTCAGCCATCAATACTGGGACTGGAGGAGCATGGAATCGTTGAGCAGCTT 1007
Query 839 GTCCGGATTATCTCTACAGTGTCATCTGAGAACCATAGGCAGCTCTTGGAGAACACTGTA 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GTCCGGATTATCTCCACAGTGTCATCTGAGAACCATAGGCAGCTCTTGGAGAACACTGTA 1067
Query 899 CTTTGTGGTGGTACAACCTCCATGACAGGATTCGAAAGTAGATTTCAGAAAGAAGCAAAC 958
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1068 CTTTGTGGTGGTACAACCTCCATGACAGGATTCGAAAGTAGATTCCAGAAAGAAGCAAAC 1127
Query 959 TTGTGCTCATCTGCTATTAGGCCAACACTGGTGAAACCACCGGAATATATGCCAGAGAAT 1018
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1128 TTGTGCTCATCTGCCATTAGGCCAACACTGGTGAAACCGCCAGAATATATGCCGGAGAAT 1187
Query 1019 TTGGGGATGTATTCGGCTTGGGTTGGAGGAGCCATACTAGCTAAAGTGGTGTTTCCGCAA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 TTGGGGATGTATTCGGCTTGGGTTGGAGGAGCCATACTAGCTAAAGTGGTGTTTCCGCAG 1247
Query 1079 AATCAGCATGTTACTAAAGCAGATTATGACGAGACTGGACCATCAGTGGTTCACCGGAAA 1138
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1248 AATCAGCACGTTACTAAAGCAGATTATGACGAGACTGGACCATCAGTGGTTCACAGGAAA 1307
Query 1139 TGTTTCTGAAACCATA---T-------G-T-T-GTTGTTGTAGCTGAGGAtttttttttt 1185
|||||||||||||||| | | | | |||||||||||||||||||||||||||
Sbjct 1308 TGTTTCTGAAACCATAGACTATAAAACGATGTTGTTGTTGTAGCTGAGGATTTTTTTTTT 1367
Query 1186 ttttttGTTGGCTTTTACTGTGATTTGAAGATTTGGACCAAATTATGTAGTAAATCTCAA 1245
||||||||| | | ||||||||| ||||||| ||||||||||| || ||||
Sbjct 1368 G-----GTTGGCTTT----G-G-TTTGAAGATGTGGACCAGATTATGTAGTACATTTCAA 1416
Query 1246 ATTATGGCTTCCAAATATCGACTAATAGGTGTT 1278
||||||||||||||||||||||||||| |||||
Sbjct 1417 ATTATGGCTTCCAAATATCGACTAATATGTGTT 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5