BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486559 Length=2125 Score E Sequences producing significant alignments: (Bits) Value AT3G60850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3236 0.0 > AT3G60850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22481894-22484102 FORWARD LENGTH=2209 Length=2209 Score = 3236 bits (1752), Expect = 0.0 Identities = 1979/2088 (95%), Gaps = 18/2088 (1%) Strand=Plus/Plus Query 49 GTCTTCGCCGTCTCCTCCTTCTTCATCTTCCTGATGAATCCTCACAAAACCGAAGAAGGT 108 ||| |||| | || || |||||||||||||||||||||| |||||||||||||||||||| Sbjct 129 GTC-TCGCTG-CTACTTCTTCTTCATCTTCCTGATGAATACTCACAAAACCGAAGAAGGT 186 Query 109 CTGTTCCACCATCATGATCTTGATCCGACGGCGGACATACTCGTTCAATCTCAACCCTCC 168 |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| Sbjct 187 CTGTTCCACCATCATGATCTTGATCCGACGGCTGACATACTCGTTCAATCACCACCCTCC 246 Query 169 ATTCTCCACCACCACCACGACCACAATTCCGAAGTCGATCCCGCTTTTTCTCTCCCGGAA 228 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 247 ATTCTCCACCACCACCACGACCACAATTCCGAAGTCGATCCCGCGTTTTCTCTCCCGGAA 306 Query 229 TTCGTACTCTTCCGCTCCTCTCCCTCCGGAGATTCACCCGGTCACTCCTCAGACGAACAC 288 ||| ||||||||||||| ||||| ||||||||||| ||||||| |||||||||||| || Sbjct 307 TTCATACTCTTCCGCTCTTCTCCTTCCGGAGATTCTCCCGGTCTCTCCTCAGACGAGCAA 366 Query 289 GACGATTCCCTTACCGGAAACCCCCAAATTGATGCTTCGTCAAATTCTAGGGTTTCGAGT 348 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 367 GACGATTCCCTTACCGGAAACCCCCAAATTGCTGATTCGTCAAATTCTAGGGTTTCGAGT 426 Query 349 GCAGGAAGAGATGGGCTTTTTATCAGCCCCGATCCTCATATCTCATCTCAGTTCTACACA 408 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 427 GCAGGAAGAGATGGGCTTTTCATCAGCCCCGATCCTCATATCTCATCTCAGTTCTACACA 486 Query 409 TTCAACGCAGCTTCTCACTCTCTCATGAT-TCGCTGTCTCCGCGAGGTCCGTCTCGCTAC 467 ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct 487 TTCAACGCAGCTTCTCACTCTCTCATG-TGTCGCTGTCTCCGCGAGGGCCGTCTCGCTAC 545 Query 468 TCCGGCGGAGATCCGTATCGCTACGCCGAGGTCTGTCCTCAAGTCATGGCGCGCCGTTTG 527 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 546 TCCGGCGGAGATCCGTATCGCTACACCGAGGTCTGTCCTCAAGTCATGGCGCGCCGTTTG 605 Query 528 GAAGGATCGTAACGAGGAAACGGCTTACCTCACCGCCTGGAAACGGATCCAGGATAAGCT 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 606 GAAGGATCGTAACGAGGAAACGGCTTACCTCACCGCCTGGAAACGGATCCAGGATAAGCT 665 Query 588 CACCTCTCGCCTCGACCCAGCCACCGGTAACGAATTTCTCTGCTTCAAGAATAATTCTCA 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 666 CACCTCTCGCCTCGACCCAGCCACCGGTAACGAATTTCTCTGCTTCAAGAATAATTCTCA 725 Query 648 GCAATTCGTCTCTCACATTAACCAGTGGCAAGATATAGTCATGGGGTTTCACGGTGATGG 707 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 726 GCAATTCGTCTCTCACATTAACCAGTGGCAAGATATAGTCATGGGGTTTCACGCTGATGG 785 Query 708 TGATTTGAAACACTTAGGGCCT-AAAGAGACTATTGAGAGGATTAAGCAAGTTTGGACTG 766 |||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 786 TGATTTGAAACACTTAGG-CCAGAAAGAGACTATTGATAGGATTAAGCAAGTTTGGACTG 844 Query 767 TTGGTGCTAAGCTCTATGGAATTCCCGAGAGCTTTATTAGGGTTTGTGTAGCGGCATGTC 826 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 845 TTGGTGCTAAGCTCTATGGAATTCCCGAGAGCTTTATTAGGGTTTGTGTAGCGGCGTGTC 904 Query 827 CTGTTTGCAATGCTGACTCTGGCTCTGGTTCGAGGAACAAACGGCGTCGATTTGAGTATA 886 ||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||| Sbjct 905 CTGTTTGCAATGCCGACTCTGGTTCTGCTTCGAGGAACAAACGCCGTCGATTTGAGTATA 964 Query 887 CTGAGTCTTTTGATGTGCCTGCCAAGGAAGTTCCCGATAGGTTGCAGCAACTGGCTGCTA 946 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 CGGAGTCTCTTGATGTGCCTGCCAAGGAAGTTCCCGATAGGTTGCAGCAACTGGCTGCTA 1024 Query 947 AGCACAAGGTTGTCCTCTGCATTAGGCAGAAGTATATTAGGTATAAGCCATTCATGGCAG 1006 ||||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||| Sbjct 1025 AGCACAAGGTTGTGCTCTGTATAAGGCAGAAGTATATTAGGTATAAGCCGTTTATGGCAG 1084 Query 1007 AGGTGAAGGATTATGCTTGTCATAGAGCTGGAGAGCCTGTCTCAATTAAGAAGTCTAGGA 1066 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1085 AGGTGAAGGATTATGCTTGTCACAGAGCTGGAGAGCCTGTATCAATTAAGAAGTCTAGGA 1144 Query 1067 TTTTGAAGAGGGAGCCCTATCAGTCAAAGAGATGCGGTTGTGGTTTTAGGATTAGAGCTA 1126 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1145 TTTTGAAGAGGGAGCCTTATCAGTCAAAGAGATGCGGTTGTGGTTTTAGGATTAGAGCTA 1204 Query 1127 TTGTGCCCATTGCTAACTACAGTGAAAAGACCAAAACTTTTGTGTATCAGGAAGAAGGGA 1186 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1205 TTGTTCCCATTGCTAACTACAGTGAAAAGACCAAAACTTTTGTATATCAGGAAGAAGGGA 1264 Query 1187 CAGCTGTTTTTAAGCTATACGCTGTCCATTCAGGACACGAGCCGGGGGCAATGGATGGAA 1246 |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 1265 CAGCTGTTTTTAAGCTATACGCTGTCCATTCAGGGCATGAGCCGGGGGCTATGGATGGAA 1324 Query 1247 ATGCGAGAATCATGCATCGGGTTGTTGGTCATAAGGGGTTTTTGATGGATCAAGAGACGG 1306 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1325 ATGCGAGAATCATGCATCGGGTTGTTGGTCATAAGGGTTTTTTGATGGATCAAGAGACTG 1384 Query 1307 TCTACGGAGTGCAGGA--A-GACTTAGAAACCGAAGGGATGGGATTGACTGGGAAGGATG 1363 |||||||||||| ||| | ||| | |||||||||||||||||||||||||||||||||| Sbjct 1385 TCTACGGAGTGCGGGACGAAGACGTGGAAACCGAAGGGATGGGATTGACTGGGAAGGATG 1444 Query 1364 ATGGTGCCGAAATGCAGTTTGCTGTCTTGCATCAGGTGCAGGAACTAAGGAGTGAACTTG 1423 | ||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1445 AACGTGCCGAGATGCAGTTTACTGTCTTGCATCAGGTGCAGGAACTAAGGAGCGAACTTG 1504 Query 1424 GCACTCTAGAAGGAAAGATTGGGAATTTCTCACAAGAGATGTTGGGTTCAGTGTCCACAG 1483 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1505 GCACTCTAGAAGGAAAGATTGGGAATTTTTCACAAGAGATGTTGGGTTCAGTGTCCACAG 1564 Query 1484 AGTTGTTTGAGATGCTCAACAAGATCAGGAATATCGGCGTTGAGAGTGTTAAGGATACAA 1543 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 1565 AGTTGTTTGAGATGCTCAACAAGATCAGAAATATCGGCGTTGAGAGTGCCCAGGATACAA 1624 Query 1544 CAGGCTTGGTTTCAGAGAAGTCACACTCAGATGAAATACTTGTTGGAGATAACGATCTAA 1603 | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1625 CGGGCTTGGTTGCAGAGAAATCACACTCAGATGAAATACTTGTTGGAGATAACGATCTAG 1684 Query 1604 CACATTGGAGTGACCATCACCACGAGCATTTATACGGAGATGGGAAGGATACAGAACTTA 1663 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1685 TACATTGGAGTGACCATCACCACGAGCATTTATATGGAGATGGGAAGGATGCAGAACTTA 1744 Query 1664 TTGAAGACGATGAGGACAGTTTTGAGAGGAGCCTTGATGATGTTGTTCCTTGGGAACAGA 1723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1745 TTGAAGACGATGAGGACAGTTTTGAGAGGAGCCTTGATGATGTTGTTCCTTGGGAACAGA 1804 Query 1724 TAAGGCCACCGTCGGATTGTAGAAGTCAGAAGGA---TCTCTTGGCTGAGACATGTAAGC 1780 ||| ||||||||| ||||||| || ||| ||||| ||| ||| ||||||||||||||| Sbjct 1805 TAACGCCACCGTCAGATTGTACAAATCAAAAGGAGGATCTTTTGTCTGAGACATGTAAGC 1864 Query 1781 CTGATAAATGGCTAAAGTGCAATGACTTTGATGAGAATAGCATTCTGAATAGCGAAGATT 1840 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1865 CTGAGAAATGGTTAAAGTGCAATGACTTTGATGAGAATAGCATTCTGAATAGCGAAGATT 1924 Query 1841 CTAAATTAACAAAACCGATGAACCACGATGGAGGTAGTATAGTAACAGATGTAGGTTTAG 1900 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1925 CTAAATTAACAAAACCGATGAGCCACGATGGAGGTAGTATAGAAACAGATGTAGGTTTAG 1984 Query 1901 CTGGTATACAAGTCGATGATAGCTTCTATCAAGAAAACTCCAAATGGTATGACTCTCCTT 1960 ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| Sbjct 1985 CTGGTATACAAGTCGAT-A--GCTTCTATCAAGAAAACTCGAAATGGTATGACTCTCCTT 2041 Query 1961 GTGGTTTGGATTCAAACACGGACGGTGAAGACAATGGATTTAG-ACAC--GGGGAGATTT 2017 ||||||||||||||||||||||||||||||||| |||||| || | || |||||||||| Sbjct 2042 GTGGTTTGGATTCAAACACGGACGGTGAAGACACTGGATTCAGCAGACATGGGGAGATTT 2101 Query 2018 TGTAGAAACACGGTAAGGTTCTTCAATATAACGAATTTCTAACTCTCTATCTCATACATC 2077 |||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| ||||| Sbjct 2102 TGTAGAAACATGGTAAGGTTCTTCGATATAACCAATTTCTAACTTTCTATCTCACACATC 2161 Query 2078 TTGTTATGCATATCCTTTCCCAATTCATAAATGGGAATCAGGTTGTAT 2125 | |||||||||| |||| ||||| ||||||||||||| ||| |||||| Sbjct 2162 TCGTTATGCATACCCTTCCCCAACTCATAAATGGGAACCAGATTGTAT 2209 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 2 AAATAAAATTAATTAAAACAAAACACAT 29 |||||||||||||||||||||||||||| Sbjct 31 AAATAAAATTAATTAAAACAAAACACAT 58 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105370943955 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5