BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486559
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3236 0.0
> AT3G60850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 11 growth stages; Has
42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0;
Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22481894-22484102
FORWARD LENGTH=2209
Length=2209
Score = 3236 bits (1752), Expect = 0.0
Identities = 1979/2088 (95%), Gaps = 18/2088 (1%)
Strand=Plus/Plus
Query 49 GTCTTCGCCGTCTCCTCCTTCTTCATCTTCCTGATGAATCCTCACAAAACCGAAGAAGGT 108
||| |||| | || || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 129 GTC-TCGCTG-CTACTTCTTCTTCATCTTCCTGATGAATACTCACAAAACCGAAGAAGGT 186
Query 109 CTGTTCCACCATCATGATCTTGATCCGACGGCGGACATACTCGTTCAATCTCAACCCTCC 168
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 187 CTGTTCCACCATCATGATCTTGATCCGACGGCTGACATACTCGTTCAATCACCACCCTCC 246
Query 169 ATTCTCCACCACCACCACGACCACAATTCCGAAGTCGATCCCGCTTTTTCTCTCCCGGAA 228
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 247 ATTCTCCACCACCACCACGACCACAATTCCGAAGTCGATCCCGCGTTTTCTCTCCCGGAA 306
Query 229 TTCGTACTCTTCCGCTCCTCTCCCTCCGGAGATTCACCCGGTCACTCCTCAGACGAACAC 288
||| ||||||||||||| ||||| ||||||||||| ||||||| |||||||||||| ||
Sbjct 307 TTCATACTCTTCCGCTCTTCTCCTTCCGGAGATTCTCCCGGTCTCTCCTCAGACGAGCAA 366
Query 289 GACGATTCCCTTACCGGAAACCCCCAAATTGATGCTTCGTCAAATTCTAGGGTTTCGAGT 348
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 367 GACGATTCCCTTACCGGAAACCCCCAAATTGCTGATTCGTCAAATTCTAGGGTTTCGAGT 426
Query 349 GCAGGAAGAGATGGGCTTTTTATCAGCCCCGATCCTCATATCTCATCTCAGTTCTACACA 408
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 427 GCAGGAAGAGATGGGCTTTTCATCAGCCCCGATCCTCATATCTCATCTCAGTTCTACACA 486
Query 409 TTCAACGCAGCTTCTCACTCTCTCATGAT-TCGCTGTCTCCGCGAGGTCCGTCTCGCTAC 467
||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||
Sbjct 487 TTCAACGCAGCTTCTCACTCTCTCATG-TGTCGCTGTCTCCGCGAGGGCCGTCTCGCTAC 545
Query 468 TCCGGCGGAGATCCGTATCGCTACGCCGAGGTCTGTCCTCAAGTCATGGCGCGCCGTTTG 527
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 546 TCCGGCGGAGATCCGTATCGCTACACCGAGGTCTGTCCTCAAGTCATGGCGCGCCGTTTG 605
Query 528 GAAGGATCGTAACGAGGAAACGGCTTACCTCACCGCCTGGAAACGGATCCAGGATAAGCT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GAAGGATCGTAACGAGGAAACGGCTTACCTCACCGCCTGGAAACGGATCCAGGATAAGCT 665
Query 588 CACCTCTCGCCTCGACCCAGCCACCGGTAACGAATTTCTCTGCTTCAAGAATAATTCTCA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CACCTCTCGCCTCGACCCAGCCACCGGTAACGAATTTCTCTGCTTCAAGAATAATTCTCA 725
Query 648 GCAATTCGTCTCTCACATTAACCAGTGGCAAGATATAGTCATGGGGTTTCACGGTGATGG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 726 GCAATTCGTCTCTCACATTAACCAGTGGCAAGATATAGTCATGGGGTTTCACGCTGATGG 785
Query 708 TGATTTGAAACACTTAGGGCCT-AAAGAGACTATTGAGAGGATTAAGCAAGTTTGGACTG 766
|||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 786 TGATTTGAAACACTTAGG-CCAGAAAGAGACTATTGATAGGATTAAGCAAGTTTGGACTG 844
Query 767 TTGGTGCTAAGCTCTATGGAATTCCCGAGAGCTTTATTAGGGTTTGTGTAGCGGCATGTC 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 845 TTGGTGCTAAGCTCTATGGAATTCCCGAGAGCTTTATTAGGGTTTGTGTAGCGGCGTGTC 904
Query 827 CTGTTTGCAATGCTGACTCTGGCTCTGGTTCGAGGAACAAACGGCGTCGATTTGAGTATA 886
||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 905 CTGTTTGCAATGCCGACTCTGGTTCTGCTTCGAGGAACAAACGCCGTCGATTTGAGTATA 964
Query 887 CTGAGTCTTTTGATGTGCCTGCCAAGGAAGTTCCCGATAGGTTGCAGCAACTGGCTGCTA 946
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 CGGAGTCTCTTGATGTGCCTGCCAAGGAAGTTCCCGATAGGTTGCAGCAACTGGCTGCTA 1024
Query 947 AGCACAAGGTTGTCCTCTGCATTAGGCAGAAGTATATTAGGTATAAGCCATTCATGGCAG 1006
||||||||||||| ||||| || |||||||||||||||||||||||||| || |||||||
Sbjct 1025 AGCACAAGGTTGTGCTCTGTATAAGGCAGAAGTATATTAGGTATAAGCCGTTTATGGCAG 1084
Query 1007 AGGTGAAGGATTATGCTTGTCATAGAGCTGGAGAGCCTGTCTCAATTAAGAAGTCTAGGA 1066
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1085 AGGTGAAGGATTATGCTTGTCACAGAGCTGGAGAGCCTGTATCAATTAAGAAGTCTAGGA 1144
Query 1067 TTTTGAAGAGGGAGCCCTATCAGTCAAAGAGATGCGGTTGTGGTTTTAGGATTAGAGCTA 1126
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TTTTGAAGAGGGAGCCTTATCAGTCAAAGAGATGCGGTTGTGGTTTTAGGATTAGAGCTA 1204
Query 1127 TTGTGCCCATTGCTAACTACAGTGAAAAGACCAAAACTTTTGTGTATCAGGAAGAAGGGA 1186
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1205 TTGTTCCCATTGCTAACTACAGTGAAAAGACCAAAACTTTTGTATATCAGGAAGAAGGGA 1264
Query 1187 CAGCTGTTTTTAAGCTATACGCTGTCCATTCAGGACACGAGCCGGGGGCAATGGATGGAA 1246
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 1265 CAGCTGTTTTTAAGCTATACGCTGTCCATTCAGGGCATGAGCCGGGGGCTATGGATGGAA 1324
Query 1247 ATGCGAGAATCATGCATCGGGTTGTTGGTCATAAGGGGTTTTTGATGGATCAAGAGACGG 1306
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1325 ATGCGAGAATCATGCATCGGGTTGTTGGTCATAAGGGTTTTTTGATGGATCAAGAGACTG 1384
Query 1307 TCTACGGAGTGCAGGA--A-GACTTAGAAACCGAAGGGATGGGATTGACTGGGAAGGATG 1363
|||||||||||| ||| | ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1385 TCTACGGAGTGCGGGACGAAGACGTGGAAACCGAAGGGATGGGATTGACTGGGAAGGATG 1444
Query 1364 ATGGTGCCGAAATGCAGTTTGCTGTCTTGCATCAGGTGCAGGAACTAAGGAGTGAACTTG 1423
| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1445 AACGTGCCGAGATGCAGTTTACTGTCTTGCATCAGGTGCAGGAACTAAGGAGCGAACTTG 1504
Query 1424 GCACTCTAGAAGGAAAGATTGGGAATTTCTCACAAGAGATGTTGGGTTCAGTGTCCACAG 1483
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1505 GCACTCTAGAAGGAAAGATTGGGAATTTTTCACAAGAGATGTTGGGTTCAGTGTCCACAG 1564
Query 1484 AGTTGTTTGAGATGCTCAACAAGATCAGGAATATCGGCGTTGAGAGTGTTAAGGATACAA 1543
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1565 AGTTGTTTGAGATGCTCAACAAGATCAGAAATATCGGCGTTGAGAGTGCCCAGGATACAA 1624
Query 1544 CAGGCTTGGTTTCAGAGAAGTCACACTCAGATGAAATACTTGTTGGAGATAACGATCTAA 1603
| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1625 CGGGCTTGGTTGCAGAGAAATCACACTCAGATGAAATACTTGTTGGAGATAACGATCTAG 1684
Query 1604 CACATTGGAGTGACCATCACCACGAGCATTTATACGGAGATGGGAAGGATACAGAACTTA 1663
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1685 TACATTGGAGTGACCATCACCACGAGCATTTATATGGAGATGGGAAGGATGCAGAACTTA 1744
Query 1664 TTGAAGACGATGAGGACAGTTTTGAGAGGAGCCTTGATGATGTTGTTCCTTGGGAACAGA 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 TTGAAGACGATGAGGACAGTTTTGAGAGGAGCCTTGATGATGTTGTTCCTTGGGAACAGA 1804
Query 1724 TAAGGCCACCGTCGGATTGTAGAAGTCAGAAGGA---TCTCTTGGCTGAGACATGTAAGC 1780
||| ||||||||| ||||||| || ||| ||||| ||| ||| |||||||||||||||
Sbjct 1805 TAACGCCACCGTCAGATTGTACAAATCAAAAGGAGGATCTTTTGTCTGAGACATGTAAGC 1864
Query 1781 CTGATAAATGGCTAAAGTGCAATGACTTTGATGAGAATAGCATTCTGAATAGCGAAGATT 1840
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 CTGAGAAATGGTTAAAGTGCAATGACTTTGATGAGAATAGCATTCTGAATAGCGAAGATT 1924
Query 1841 CTAAATTAACAAAACCGATGAACCACGATGGAGGTAGTATAGTAACAGATGTAGGTTTAG 1900
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1925 CTAAATTAACAAAACCGATGAGCCACGATGGAGGTAGTATAGAAACAGATGTAGGTTTAG 1984
Query 1901 CTGGTATACAAGTCGATGATAGCTTCTATCAAGAAAACTCCAAATGGTATGACTCTCCTT 1960
||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1985 CTGGTATACAAGTCGAT-A--GCTTCTATCAAGAAAACTCGAAATGGTATGACTCTCCTT 2041
Query 1961 GTGGTTTGGATTCAAACACGGACGGTGAAGACAATGGATTTAG-ACAC--GGGGAGATTT 2017
||||||||||||||||||||||||||||||||| |||||| || | || ||||||||||
Sbjct 2042 GTGGTTTGGATTCAAACACGGACGGTGAAGACACTGGATTCAGCAGACATGGGGAGATTT 2101
Query 2018 TGTAGAAACACGGTAAGGTTCTTCAATATAACGAATTTCTAACTCTCTATCTCATACATC 2077
|||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| |||||
Sbjct 2102 TGTAGAAACATGGTAAGGTTCTTCGATATAACCAATTTCTAACTTTCTATCTCACACATC 2161
Query 2078 TTGTTATGCATATCCTTTCCCAATTCATAAATGGGAATCAGGTTGTAT 2125
| |||||||||| |||| ||||| ||||||||||||| ||| ||||||
Sbjct 2162 TCGTTATGCATACCCTTCCCCAACTCATAAATGGGAACCAGATTGTAT 2209
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 2 AAATAAAATTAATTAAAACAAAACACAT 29
||||||||||||||||||||||||||||
Sbjct 31 AAATAAAATTAATTAAAACAAAACACAT 58
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105370943955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5