BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486561
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60870.1 | Symbols: AHL18 | AT-hook motif nuclear-localized ... 1027 0.0
AT2G45430.1 | Symbols: AHL22 | AT-hook motif nuclear-localized ... 248 6e-65
> AT3G60870.1 | Symbols: AHL18 | AT-hook motif nuclear-localized
protein 18 | chr3:22493204-22494001 FORWARD LENGTH=798
Length=798
Score = 1027 bits (556), Expect = 0.0
Identities = 724/803 (90%), Gaps = 19/803 (2%)
Strand=Plus/Plus
Query 1 ATGGATGAGGTCTCTCGTTCTCATCCACCGCATTTTTTATCAAGTGATCTTCATCACTAT 60
||||||||||| |||||||||||| ||||||| ||| |||||||||||| ||| ||||||
Sbjct 1 ATGGATGAGGTATCTCGTTCTCATACACCGCAATTTCTATCAAGTGATCATCAGCACTAT 60
Query 61 CACCATCAAAACGCT-G--GACTAAAACGCGACAGAGAAGAAG-ACGATGTTGAACCCAA 116
||||||||||||||| | ||| |||||||| ||||||||||| | || |||||||||||
Sbjct 61 CACCATCAAAACGCTGGACGACAAAAACGCGGCAGAGAAGAAGAAGGA-GTTGAACCCAA 119
Query 117 CAACGA-CGGCAAAGACCAAGACA-CTACTCCTTCAGAAGGAGGGAATATCAAGAAGAGG 174
||| | || |||||| || || || |||||| | || || |||||||||||||||
Sbjct 120 CAA-TATAGGGGAAGACCTAGCCACCT-TTCCTTCCGGAGAAGAGAATATCAAGAAGAGA 177
Query 175 AGACCACGTGGAAGACCCGCAGGTTCCAAAAACAAACCCAAAGCACCGATCATAGTCACT 234
|| |||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 178 AGGCCACGTGGCAGACCTGCTGGTTCCAAGAACAAACCCAAAGCACCAATCATAGTCACT 237
Query 235 CGCGACTCTGCGAACGCCTTCAGATGCCACGTCATGGAGATAACCAACGGCTGCGATGTA 294
|||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 238 CGCGACTCCGCGAACGCCTTCAGATGTCACGTCATGGAGATAACCAACGCCTGCGATGTA 297
Query 295 ATGGAAAGCTTAGCCGTCTTCGCTAGACGCCGTCAGCGTGGCGTTTGCGTCTTGACTGGA 354
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 ATGGAAAGCCTAGCCGTCTTCGCTAGACGCCGTCAGCGTGGCGTTTGCGTCTTGACCGGA 357
Query 355 AACGGCGCCGTTACAAACGTCACTGTTAGACAACCCGGCGGAGGCGTCGTTAGTTTACAC 414
||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 358 AACGGGGCCGTTACAAACGTCACCGTTAGACAACCTGGCGGAGGCGTCGTCAGTTTACAC 417
Query 415 GGACGGTTCGAGATtctctctctctcGGGCTCGTTTCTTCCTCCACCGGCTCCACCGGCT 474
|||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 418 GGACGGTTTGAGATTCTTTCTCTCTCGGGTTCGTTTCTTCCTCCACCGGCACCACCAGCT 477
Query 475 GCGACTGGTTTAACGGTTTACTTAGCCGGTGGTCAAGGTCAAGTGATCGGAGGCAGTTTG 534
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 GCGTCTGGTTTAAAGGTTTACTTAGCCGGTGGTCAAGGTCAAGTGATCGGAGGCAGTGTG 537
Query 535 GTGGGACCGCTTATGGCTTCAGGTCCGGTGGT-GATTATGGCAGCTTCGTTTGGAAACGC 593
||||||||||||| ||| ||| |||||||||| | ||||||||||||| |||||||||||
Sbjct 538 GTGGGACCGCTTACGGCATCAAGTCCGGTGGTCG-TTATGGCAGCTTCATTTGGAAACGC 596
Query 594 AGCTTACGAGAGGCTGCAACTAGAGGAGGAGGA--AA-CTGATAGAGAAATAGATGGAAA 650
| ||||||||||||||| ||||||||||||||| || |||| |||||||||||||||||
Sbjct 597 ATCTTACGAGAGGCTGCCACTAGAGGAGGAGGAGGAAACTGAAAGAGAAATAGATGGAAA 656
Query 651 CGCCAG-TATGGCGGTTGGAACGCAAACGCAGAAACAGTTAATGCATGATGCGACATCGT 709
||| | || |||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 657 CGCG-GCTAGGGCGATTGGAACGCAAACGCAGAAACAGTTAATGCAAGATGCGACATCGT 715
Query 710 TTGTACAAGGGTCACCGTCGAATTTAATCAACTCTGTTTCGTTGCCAAGTGAAGCTTATT 769
|| | ||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 716 TTATT---GGGTCGCCGTCGAATTTAATTAACTCTGTTTCGTTGCCAGGTGAAGCTTATT 772
Query 770 GGGGAACGCAACGACCGTCTTTC 792
|||||||||||||||||||||||
Sbjct 773 GGGGAACGCAACGACCGTCTTTC 795
> AT2G45430.1 | Symbols: AHL22 | AT-hook motif nuclear-localized
protein 22 | chr2:18727561-18728935 FORWARD LENGTH=1375
Length=1375
Score = 248 bits (134), Expect = 6e-65
Identities = 362/467 (78%), Gaps = 36/467 (8%)
Strand=Plus/Plus
Query 171 GAGGAGACCACGTGGAAGACCCGCAGGTTCCAAAAACAAACCCAAAGCACCGATCAT-AG 229
||| || |||||||| ||||| || || || || |||||||| ||| | || ||||| |
Sbjct 551 GAGAAGGCCACGTGGCAGACCAGCGGGATCTAAGAACAAACCAAAACCGCCAATCATCA- 609
Query 230 TCACTCGCGAC-TCTGCGAACGCCT-TCAGATGC-CACGTCATGG-AGATAACCAACGGC 285
||||||| ||| | || |||| || ||| || | || ||||||| || || | |||||
Sbjct 610 TCACTCGAGACAGC-GCAAACG-CTCTCAAAT-CTCATGTCATGGAAG-TAGCAAACGGA 665
Query 286 TGCGATGTAATGGAAAGCT-T-AGCCGTCTTCGCTAGACGCCGTCAGCGTGGCGTTTGCG 343
|| || || |||||||| | | | ||||||||||| | || || || |||||| | ||||
Sbjct 666 TGTGACGTCATGGAAAG-TGTCA-CCGTCTTCGCTCGCCGTCGCCAACGTGGCATCTGCG 723
Query 344 TCTTGA-CTGGAAACGGCGCCGTTACAAACGTCACTGTTAGAC-A--A----C----CC- 390
| |||| | ||||||||||||||||| ||||| || | |||| | | | ||
Sbjct 724 TTTTGAGC-GGAAACGGCGCCGTTACCAACGTTACCATAAGACAACCAGCTTCAGTACCT 782
Query 391 GGCGGAGG-----C-GTCGTTAGTTTACACGGACGGTTCGAGATtctctctctctcGGGC 444
|| || || | ||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 783 GGTGGTGGCTCATCTGTCGTTAACTTACACGGACGTTTCGAGATTCTTTCTCTCTCGGGA 842
Query 445 TCGTTTCTTCCTCCACCGGCTCCACCGGCTGCGACTGGTTTAACGGTTTACTTAGCCGGT 504
|| || |||||||| ||||||||||| |||||| | ||| ||||| ||||||||||||||
Sbjct 843 TCATTCCTTCCTCCTCCGGCTCCACCAGCTGCGTCAGGTCTAACGATTTACTTAGCCGGT 902
Query 505 GGTCAAGGTCAAG-TGATCGGAGGCAGTTTGGTGGGACCGCTTATGGCTTCAGGTCCGGT 563
||||| || || | || | ||||| || |||| || || || ||||||||||| || ||
Sbjct 903 GGTCAGGGACAGGTTG-TTGGAGGAAGCGTGGTTGGTCCACTCATGGCTTCAGGACCTGT 961
Query 564 GGTGATTATGGCAGCTTCGTTTGGAAACGCAGCTTACGAGAGGCTGC 610
||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct 962 AGTGATTATGGCAGCTTCGTTTGGAAACGCTGCGTATGAGAGACTGC 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5