BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486562
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60880.2 | Symbols: DHDPS, DHDPS1 | dihydrodipicolinate synt... 2067 0.0
AT2G45440.1 | Symbols: DHDPS2 | dihydrodipicolinate synthase | ... 1035 0.0
> AT3G60880.2 | Symbols: DHDPS, DHDPS1 | dihydrodipicolinate synthase
1 | chr3:22494852-22496697 FORWARD LENGTH=1487
Length=1487
Score = 2067 bits (1119), Expect = 0.0
Identities = 1357/1467 (93%), Gaps = 36/1467 (2%)
Strand=Plus/Plus
Query 1 TTACTTTTGCCGGAATCTGACGTCAGCATGCCCTGCAACCACTTCCAGAGCTCAATCGAT 60
||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 29 TTACTTTTGTCGGAATCTGACGTCAGCAT-ACCTGCTACCACTTCCAGAGTTCAATCGAT 87
Query 61 CTT-GACCTCGTTGCGACGTTTT-CCGCTTCGATTATCGACAGTGTGC-CCACTATTATC 117
||| | |||||||| ||||||| || ||||||||||| ||||||| | ||||| ||||
Sbjct 88 CTTCG-CCTCGTTGAAACGTTTTCCCTCTTCGATTATCAACAGTGT-CTCCACTCGTATC 145
Query 118 ATCACCTCCTACAACTGATTTTGTCTTCTCTCTCGTCGTTCGAATTTGA-T-T-C---T- 170
|||||| ||| ||||| |||||| | |||||||||| |||| ||||||| | | | |
Sbjct 146 ATCACCGCCTCCAACTAATTTTGCCATCTCTCTCGTTGTTCCAATTTGATTCTACTAGTG 205
Query 171 A----C----T-ATTTA--------AAAGATGGCAGCTTTGAAAGGTCACGGCTTGATCT 213
| | | ||||| ||||||| ||||||||||| | ||||||||||||
Sbjct 206 AGCTCCGATTTAATTTAGGGTTTTGAAAGATGTCAGCTTTGAAAAATTACGGCTTGATCT 265
Query 214 CCATTGACTCTGCCCTCCATTTTCCTCGCTCACATCAATTGGAGAGCTACAAGAGAAGGA 273
||||||| |||||||||||||||||||| ||| |||||||| ||||||| ||||||||||
Sbjct 266 CCATTGATTCTGCCCTCCATTTTCCTCGATCAAATCAATTGCAGAGCTATAAGAGAAGGA 325
Query 274 ATGCGAAATGGGTCTCTCCAAAAGCAGCTGTTGTACCTAACTTCCATCTTCCAATGCGCA 333
|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 326 ATGCAAAATGGGTCTCTCCAATAGCAGCTGTTGTACCTAACTTCCATCTTCCTATGCGCA 385
Query 334 GTCTCGAGGATAAAAACAGGACAAACACAGACGACATAAGGTCCCTTAGAGTGATCACAG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GTCTCGAGGATAAAAACAGGACAAACACAGACGACATAAGGTCCCTTAGAGTGATCACAG 445
Query 394 CCATTAAGACACCGTATCTACCTGATGGAAGATTCGATCTCCAAGCGTACGATGACTTAG 453
||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 446 CCATTAAGACACCGTATTTACCTGATGGAAGATTCGACCTCCAAGCATACGATGACTTAG 505
Query 454 TCAACACGCAGATAGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACCGGTGAAG 513
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 506 TCAACACGCAGATAGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACTGGTGAAG 565
Query 514 GCCAATTGATGAGCTGGGATGAGCATATAATGCTTATAGGCCATACCGTAAATTGTTTTG 573
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 566 GCCAATTGATGAGCTGGGATGAGCACATAATGCTTATCGGCCATACTGTAAATTGTTTTG 625
Query 574 GCGGAAGAATCAAAGTCATTGGAAACACTGGAAGCAACTCGACTAGGGAAGCTATACATG 633
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 626 GGGGAAGGATCAAAGTCATTGGAAACACTGGAAGTAACTCGACTAGGGAAGCTATTCATG 685
Query 634 CCACTGAGCAAGGATTCGCTGTGGGAATGCACGGGGCACTGCACATTAACCCTTACTATG 693
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 686 CCACTGAGCAAGGATTCGCCATGGGAATGCACGGGGCACTGCACATTAACCCTTACTATG 745
Query 694 GAAAAACATCCATTGAAGGCATGACCGCGCATTTTCAAACCGTTCTTCATATGGGACCGA 753
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 746 GAAAAACATCCATTGAAGGCATGAATGCGCATTTTCAAACCGTTCTTCATATGGGACCGA 805
Query 754 CGATTATATACAATGTGCCAGGTCGAACGAGTCAAGATATACCTCCCCAGGTTATCTTTA 813
| ||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 806 CTATTATATACAACGTGCCAGGTCGAACGTGCCAGGATATACCTCCCCAGGTTATCTTTA 865
Query 814 AACTCTCTCGGAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTG 873
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 AACTCTCTCAGAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTG 925
Query 874 AAGAGTATACTGAGAATGGAATTGTAGTGTGGAGTGGAAATGATGATCAGTGCCATGATT 933
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 926 AAGAGTATACTGAGAAGGGAATTGTCGTTTGGAGTGGAAATGATGATCAGTGCCATGATT 985
Query 934 CAAGATGGGATCACGGCGCAACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTT 993
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CTAGATGGGATCACGGTGCCACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTT 1045
Query 994 TGATGAGGAAGTTAATGTTTGAAGGTAGAAACTCAGCGTTGAACTCAAAGCTACTTCCTC 1053
||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1046 TGATGAGGAAGTTGATGTTTGAAGGTAGAAACTCAGCGTTGAACGCAAAGCTTCTTCCTT 1105
Query 1054 TAATGGATTGGCTATTCCAAGAACCCAATCCGATTGGTGTTAATACTGCTTTGGCTCAGT 1113
||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||
Sbjct 1106 TAATGGATTGGCTATTCCAAGAACCGAATCCCATTGGTGTAAACACTGCTTTGGCTCAGT 1165
Query 1114 TAGGAGTTGCTAGGCCTGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGA 1173
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TAGGAGTTGCGAGGCCGGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGA 1225
Query 1174 TTGAGTTCG-TAAGGCTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGAT 1232
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TTGAGTTCGTTAA-ACTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGAT 1284
Query 1233 GTTCAGGTACTTGATGATGATGACTTCATCTTAATCGGTCGATATTAGAGTCTCTTCCTT 1292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1285 GTTCAGGTACTTGATGATGATGACTTCATCTTAATCGGTCGATATTAGAGTCTCTTCCCT 1344
Query 1293 GAAGATTGGTTGTGTTTATACTCTCTTCGTTCAGTTATTAGTTATTTAGCTTATGAGAAA 1352
|||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 1345 GAAGATTGGTTGTGTTTATACTTTCTTCGTTCAGTTGTTAGTTATTTAGCTGATGAGAAA 1404
Query 1353 CTTACAGATGGATCATAGAGTTGTTCTACTTGTTGTAATGTTTGGTCTGTTACTTTTGGT 1412
|| |||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 1405 CTCACAGATGGATCA-AGACTT---CTACTTGTTGTAATGTTTGGTCTGTTACTTTTGGT 1460
Query 1413 GATGAATCTGATGGCTTTTGCTTACTC 1439
||||||||| |||||||||||||||||
Sbjct 1461 GATGAATCTAATGGCTTTTGCTTACTC 1487
> AT2G45440.1 | Symbols: DHDPS2 | dihydrodipicolinate synthase
| chr2:18730840-18733015 FORWARD LENGTH=1700
Length=1700
Score = 1035 bits (560), Expect = 0.0
Identities = 939/1121 (84%), Gaps = 30/1121 (3%)
Strand=Plus/Plus
Query 175 TTTAAAAGATGGCAGCTTTGAAAGGTCACGGCTTGAT-CTCCATTGACTCTGC-CCTCCA 232
||| ||||||||| |||||||||||| | |||||| | || || |||||||| | || |
Sbjct 447 TTTCAAAGATGGCTGCTTTGAAAGGTTATGGCTTG-TGTTCTATGGACTCTGCTCTTCAA 505
Query 233 TTTTCC--TCGCTCACATCAATTGGAGAGCTACAAGAGAAGGA-ATGCGAAATGGGTCTC 289
|| || || || | | | ||| | |||||||||||||||| | |||||||||||||
Sbjct 506 TTCCCCTGTC-CT-A-AGCTATTCAATAGCTACAAGAGAAGGAGCT-CGAAATGGGTCTC 561
Query 290 TCCAAAAGCAGCTGTTGTACCTAACTTCCATCTTCCAATGCGCAGTC-TCGAGGATAAAA 348
||| ||||||||||||||||| || |||||||| ||||||||||| | | |||| |||||
Sbjct 562 TCCCAAAGCAGCTGTTGTACCCAATTTCCATCTCCCAATGCGCAG-CTTGGAGGTTAAAA 620
Query 349 ACAGGACAAACACAGACGACA-TAAGGTCCCTTA-GAGTGATCACAGCCATTAAGACACC 406
||||||||||||||||||||| ||| | | | || | ||||||||||| || || |||||
Sbjct 621 ACAGGACAAACACAGACGACATTAAAG-CTC-TACGTGTGATCACAGCTATCAAAACACC 678
Query 407 GTATCTACCTGATGGAAGATTCGATCTCCAAGCGTACGATGACTTAGTCAACACGCAGAT 466
|||||||||||||||||||||||| || |||| ||||||||||| ||||||| |||||
Sbjct 679 GTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTGGTCAACATTCAGAT 738
Query 467 AGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACCGGTGAAGGCCAATTGATGAG 526
| ||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||
Sbjct 739 ACAAAACGGTGCTGAAGGTGTCATTGTTGGTGGTACAACTGGTGAAGGACAACTGATGAG 798
Query 527 CTGGGATGAGCATATAATGCTTATAGGCCATACCGTAAATTGTTTTGGCGGAAGAATCAA 586
|||||| || || || |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 799 CTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCATCAA 858
Query 587 AGTCATTGGAAACACTGGAAGCAACTCGACTAGGGAAGCTATACATGCCACTGAGCAAGG 646
|||||||||||||||||||||||| |||||||| ||||| || || || ||||| |||||
Sbjct 859 AGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCGACTGAACAAGG 918
Query 647 ATTCGCTGTGGGAATGCACGGGGCACTGCACATTAACCCTTACTATGGAAAAACATCCAT 706
|||||| || |||||||| | || || || || |||||||||||||| || || || ||
Sbjct 919 ATTCGCGGTTGGAATGCATGCTGCTCTTCATATAAACCCTTACTATGGCAAGACTTCTAT 978
Query 707 TGAAGGCA-TGACCGCGCATTTTCAAACCGTTCTTCATATGGGACCGACGATTATATACA 765
|| ||| | ||| || ||||| || | |||||||||||||||||||||||||||||||
Sbjct 979 TG-AGGGACTGATTGCACATTTCCAGTCTGTTCTTCATATGGGACCGACGATTATATACA 1037
Query 766 ATGTGCCAGGTCGAAC-GAGTCAAGATATACCTCCCCAG-GTTATCTTTAAACTCTCTCG 823
||||||| |||||||| | | ||||||||||| || | | | ||||| ||||| ||||
Sbjct 1038 ATGTGCCTGGTCGAACAGGG-CAAGATATACCGCCTC-GTGCCATCTTCAAACTTTCTCA 1095
Query 824 GAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTGAAGAGTATAC 883
||| || ||| | ||||| || |||||||| ||||| || || ||||| |||||||| ||
Sbjct 1096 GAATCCGAATTTAGCTGGTGTGAAGGAATGTGTTGGGAACAAGCGAGTCGAAGAGTACAC 1155
Query 884 TGAGAATGGAATTGTAGTGTGGAGTGGAAATGATGATCAGTGCCATGATTCAAGATGGGA 943
||||||||| |||| ||||||||||| ||||||||| |||| |||||||| ||||||||
Sbjct 1156 TGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCCAGATGGGA 1215
Query 944 TCACGGCGCAACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTTTGATGAGGAA 1003
| | || ||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1216 TTATGGAGCAACAGGAGTTATATCAGTTACTAGTAATTTAGTTCCGGGTTTGATGAGGAA 1275
Query 1004 GTTAATGTTTGAAGGTAGAAACTCAGCGTTGAACTCAAAGCTACTTCCTCTAATGGATTG 1063
||| |||||||||||||| || ||| | |||||||||||||| || ||| | |||| |||
Sbjct 1276 GTTGATGTTTGAAGGTAGGAATTCATCTTTGAACTCAAAGCTTCTACCTTTGATGGCTTG 1335
Query 1064 GCTATTCCAAGAACCCAATCCGATTGGTGTTAATACTGCTTTGGCTCAG-TTAGGAGTTG 1122
||| ||||| || || || |||||||| | || ||||||||||||||| || ||||||
Sbjct 1336 GCTGTTCCACGAGCCAAACCCGATTGGAATCAACACTGCTTTGGCTCAGCTT-GGAGTTT 1394
Query 1123 CTAGGCCTGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGATTGAGTTCG 1182
| ||||| |||||| ||||||| ||||| |||||||| ||||| || ||| ||||||| |
Sbjct 1395 CGAGGCCGGTTTTTAGGTTACCATATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1454
Query 1183 T-AAGGCTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGATGTTCAGG-T 1240
| || ||||||||||| || ||| | ||||||||||| || || | ||||||||||| |
Sbjct 1455 TGAAA-CTGGTGAAGGAGATTGGACGAGAGCATTTTGTGGGTGAGAAAGATGTTCAGGCT 1513
Query 1241 ACTTGATGATGATGACTTCATC-TTAATCGGTCGATATTAG 1280
|||||||||||||| || ||| ||| ||||||||||||||
Sbjct 1514 -CTTGATGATGATGATTTTATCCTTA-TCGGTCGATATTAG 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5