BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486566
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60900.1 | Symbols: FLA10 | FASCICLIN-like arabinogalactan-p... 2407 0.0
AT2G45470.1 | Symbols: FLA8, AGP8 | FASCICLIN-like arabinogalac... 1107 0.0
> AT3G60900.1 | Symbols: FLA10 | FASCICLIN-like arabinogalactan-protein
10 | chr3:22499360-22501239 REVERSE LENGTH=1880
Length=1880
Score = 2407 bits (1303), Expect = 0.0
Identities = 1701/1882 (90%), Gaps = 72/1882 (4%)
Strand=Plus/Plus
Query 3 tttttATCTGAGTGCCTTTTACAAAATTTTGGATGATTATCTAATGAGCATCAACAAATA 62
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 24 TTTTTATCTGAGTGCCTTTTACAAAATTTTGGATGATTATCTAATGAGCATCCATAAATA 83
Query 63 AACTCAAA--TTAGTTAAGCTAGTTGACCATGGTTAACTCTAGCTGATAATCAT-AATGG 119
| |||||| |||||| ||||| ||||||||||||||||||| | | || || ||| |
Sbjct 84 AGCTCAAATTTTAGTT-AGCTACTTGACCATGGTTAACTCTAAC-AAGGATGATAAATTG 141
Query 120 ATAATGATATAACGGTT--G--C---T--TTTTGG-A-A-GACGAACCATACAA-AAAGA 166
||||||||||||||||| | | | |||||| | | ||||||||||| || |||||
Sbjct 142 ATAATGATATAACGGTTCGGTTCGGTTGCTTTTGGAAGAGGACGAACCATA-AAGAAAGA 200
Query 167 AGCCCAAAG----CCCATTTTCGTGATTTCAGACTTTTTAG--AAA--AAGCAAGCACGT 218
||| ||||| ||||||||||||||| ||| |||||||| ||| |||| |||||||
Sbjct 201 AGCTCAAAGCCCACCCATTTTCGTGATTACAGGCTTTTTAGCAAAAGGAAGC-AGCACGT 259
Query 219 GTTCTTATATTAACCATAGTTAACTCTTTAGTATAACCATGGTTAATATTTAACCTCTTC 278
||||| | |||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 260 GTTCTCAAATTAACCATAGTTAACTCTTCAATATAACCATGGTTAACATTTAACCTCTTC 319
Query 279 TTCTTCTTATTACATAACTTCATTTCTCACTCATAATTGTCTTCTCACTTTCACTTCTCC 338
||||||||| | |||||||| |||||| | |||||||||||||||| |||||||
Sbjct 320 TTCTTCTTA-T---TAACTTCA----TCACTC-TCTTTGTCTTCTCACTTTCTCTTCTCC 370
Query 339 ACAGTTCGACTTAACCGTCCAAATTCCAATGGCGGTATCACGAGCTTTCTCTCTCTTCGC 398
||||||| ||| |||| ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 371 ACAGTTCAACTCAACCTTCCAAATTCCAATGGCGACATCACGAGCTTTCACTCTCTTCGC 430
Query 399 ATTCACTTTATCTCTCCTTGCCGTCGCTTATACCGTCTCCGGCCATAACATCACTCAAAT 458
||||| ||||||||||| |||| |||| ||||||||||||||||||||| ||||||||
Sbjct 431 TTTCACATTATCTCTCCTCACCGTAGCTTCTACCGTCTCCGGCCATAACATTACTCAAAT 490
Query 459 CCTATCCGATACGCCGGAATATTCCTCATTCAACAGCTACCTTTCTCAGACAAAGCTCGC 518
||| || |||||||||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 491 CCTCTCTGATACGCCGGAATATTCCTCATTCAACAACTACCTTTCTCAAACAAAACTCGC 550
Query 519 CGACGAAATCAACAGCCGCACTACCATCACCGTCCTTGTCCTCAACAATGGCGCAATGTC 578
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 551 CGACGAAATCAACAGCCGCACTACAATCACCGTCCTTGTTCTCAACAATGGCGCAATGTC 610
Query 579 TGCCCTCGCCGGAAAACATCCACTCTCCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCCT 638
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TTCCCTCGCCGGAAAACACCCACTCTCCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCCT 670
Query 639 CCTCGATTACTACGATCCTTTAAAACTCCATCAGCTCTCTAAAGGCTCAACTCTCACCAC 698
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 671 CCTCGACTACTACGATCCTTTAAAACTCCATCAGCTCTCTAAAGGCACAACTCTCACCAC 730
Query 699 CACGCTTTACCAAACCACCGGACACGCTCCCGGAAACCTAGGATTCGTCAACGTCACCGA 758
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 731 CACGCTTTACCAAACCACCGGACACGCTCTCGGGAACCTAGGATTCGTTAACGTCACCGA 790
Query 759 TCTCAAAGGAGGCAAAGTCGGATTTGGCTCCGCCGCTCCTGGATCCAAGCTCGATTCTTC 818
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 791 TCTCAAAGGAGGCAAAGTCGGCTTTGGCTCCGCCGCTCCTGGCTCCAAGCTCGATTCCTC 850
Query 819 TTACACCAAATCCGTTAAACAAATCCCTTACAACATCTCCGTTCTCGAAATCAACGCTCC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TTACACCAAATCCGTTAAACAAATCCCTTACAACATCTCCGTTCTCGAAATCAACGCTCC 910
Query 879 GATCATCGCTCCCGGAATCTTAACCGCACCTGCTCCTTCTTCCGGCGGTGTTAACAACAT 938
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 911 GATCATCGCTCCCGGAATCTTAACCGCACCTGCTCCTTCTTCCGCCGGAGTTAGCAACAT 970
Query 939 CACCGGACTTCTCGAGAAAGCCGGTTGCAAAACCTTCGCGAATTTGCTCGTATCGAGTGG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 971 CACCGGACTTCTCGAGAAAGCCGGTTGCAAAACCTTCGCGAATTTGCTCGTATCGAGCGG 1030
Query 999 TGTTCTTAAAACCTACGAATCCACCGTTGAAAAAGGTTTGACGGTTTTTGCACCGTCCGA 1058
|||| ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1031 TGTTATTAAAACATTCGAATCCACCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGA 1090
Query 1059 TGAAGCTTTTAAAGCTAAAGGTGTACCAGATCTGACGAACCTCACGCAAGCTGAGGTGGT 1118
||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1091 TGAAGCTTTTAAAGCTAGAGGTGTACCAGATCTGACGAATCTCACACAAGCTGAGGTGGT 1150
Query 1119 CTCGCTCCTAGAGTATCACGCCCTCGCTGAATACAAACCCAAAGGATCGTTGAAGAATAA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1151 CTCGCTCCTAGAGTATCACGCCCTCGCTGAATACAAACCCAAAGGATCGTTAAAGACTAA 1210
Query 1179 CAAAGACGCTATCTCCACTTTAGCCACTAACGGCGCCGGTAAATACGATTTAACGACGTC 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 CAAAGACGCTATCTCCACTTTAGCCACTAACGGCGCCGGTAAATACGATTTAACGACGTC 1270
Query 1239 AACTTCTGGCGACGAGGTTATCCTCCATACCGGTGTTGGTCCGTCGAGACTCGCCGACAC 1298
|||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1271 AACTTCCGGTGACGAGGTTATTCTCCATACCGGCGTTGGTCCGTCGAGACTCGCCGACAC 1330
Query 1299 GGTGGTCGATGAGACACCTGTCGTGATATTCACGGTGGATAATGTACTCCTCCCCACCGA 1358
||||||||||||||||||||| || |||||||| ||||||||||| ||||| ||| | ||
Sbjct 1331 GGTGGTCGATGAGACACCTGTTGTTATATTCACTGTGGATAATGTGCTCCTTCCCGCTGA 1390
Query 1359 GCTTTTTGGAAAGTCTCCATCTCCGGCGCCGGCACCGGCACCGGAGCCAGTGAGTGCACC 1418
|||||| ||||| ||| |||| |||||||||||||||| | | ||||||||||||||
Sbjct 1391 GCTTTTCGGAAAATCTTCATCGCCGGCGCCGGCACCGG-A--G---CCAGTGAGTGCACC 1444
Query 1419 GACCCCGTCTCCGGCTAA-TGCACCGTCTCCAGTGGAAGCACCTTCTCCAACTGCAGCTT 1477
||| ||| | |||||||| | |||||||||| |||||||||||||||||||| |||||||
Sbjct 1445 GACACCGACCCCGGCTAAGT-CACCGTCTCCTGTGGAAGCACCTTCTCCAACCGCAGCTT 1503
Query 1478 CTCCGCCAGCACCTCCGGTGGATGAATCTTCGCCGGAAGGAGCCCCGTCAGACTCGCCGA 1537
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1504 CTCCGCCAGCACCACCGGTGGATGAATCTTCACCGGAAGGAGCTCCGTCAGACTCGCCGA 1563
Query 1538 CAAGTTCAGAGAACAGTAATGCGAAAAACGCAGCGTTTCACGTGAAGGCTTCTGCGTTGT 1597
||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||
Sbjct 1564 CAAGTTCAGAGAACAGTAATGCGAAAAACGCGGCGTTTCACGTTAACGCTCCTGCGTTGT 1623
Query 1598 TCACCGCATTGGTGGCTCTTGCCGCCACATCTCTCTTGTCATaaaaaaaaCCGTAATTAC 1657
||||||||||||| || ||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 1624 TCACCGCATTGGTCACTATTGCCGCCACATCTCTCTTGTTATAAACAAAACCTTAATTAC 1683
Query 1658 GAAGACTGCCATTGTCT-CC--C------TT-------CTTTGTGATTCTGTTTGTTAAA 1701
||||||||||||||||| || | || ||||||||| ||||||||||||
Sbjct 1684 GAAGACTGCCATTGTCTTCCTTCGACGAGTTTTTATTTCTTTGTGATGCTGTTTGTTAAA 1743
Query 1702 GACTGGGA-TTAGAGTGTTAAGGTTTAAGTT-AATCTTTTTAGTTAATTCAGGCTTGGAT 1759
||||||| ||||||||||| |||||| ||| |||||| |||||||||| || ||||||
Sbjct 1744 AACTGGGAATTAGAGTGTTACGGTTTACGTTTAATCTTATTAGTTAATTTAGAATTGGAT 1803
Query 1760 GAttgtttttgttttgttttgGTCTGTTCGTTTgtagtagtagtagtagtGTTGAAATAT 1819
||||||| ||||||||||||||| || ||| || | | |||||||||| |||||||
Sbjct 1804 GATTGTTATTGTTTTGTTTTGGT--GT--GTTAGT--T--T-GTAGTAGTGTCGAAATAT 1854
Query 1820 TGAGATCTTCTAATTAACTAGT 1841
||||||||||||||| ||||||
Sbjct 1855 TGAGATCTTCTAATTGACTAGT 1876
> AT2G45470.1 | Symbols: FLA8, AGP8 | FASCICLIN-like arabinogalactan
protein 8 | chr2:18742540-18744111 REVERSE LENGTH=1572
Length=1572
Score = 1107 bits (599), Expect = 0.0
Identities = 1041/1252 (83%), Gaps = 40/1252 (3%)
Strand=Plus/Plus
Query 367 ATGGCGGTATCACGAG-CTTTCTCTCTCTTCGCATTCACTTTATCTCTCCTTGCCGTCGC 425
||||||| |||| || | ||||| ||| |||| |||||||| || ||||| ||| | ||
Sbjct 53 ATGGCGGCGTCAC-AGACATTCTCACTCCTCGCCTTCACTTTCTCCCTCCTCGCCTTTGC 111
Query 426 TTATACCGTCTCCGGCCATAACATCACTCAAATCCTATCCGATACGCCGGAATATTCCTC 485
|| ||||| |||| ||||||||||||||||| | ||| | || || || || ||
Sbjct 112 TTCCACCGTGAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCAGATTACTCTTC 171
Query 486 ATTCAACAGCTACCTTTCTCAGACAAAGCTCGCCGACGAAATCAACAGCCGCACTACCAT 545
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||
Sbjct 172 CTTCAACAGCTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGAT 231
Query 546 CACCGTCCTTGTCCTCAACAATGGCGCAATGTCTGCCCTCGCCGGAAAACATCCACTCTC 605
|| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 232 TACAGTTCTCGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCTC 291
Query 606 CGTCGTCAAAAATGCTCTCAGCCTCCTCGTCCTCCTCGATTACTACGATCCTTTAAAACT 665
||| | |||| ||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 292 CGTTATTAAAAGCGCTTTAAGCCTCCTCGTCCTCCTCGATTACTACGATCCACAAAAACT 351
Query 666 CCATC-AGCTCTCTAAAGGCTCAACTCTCACCACCACGCTTTACCAAACCACCGGACACG 724
||| | || |||| |||||| |||||||| ||||||| |||||||||||||||||| |||
Sbjct 352 CCA-CAAGATCTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAACG 410
Query 725 CTCCCGGAAACCTAGGATTCGTCAACGTCACCGATCTCAAAGGAGGCAAAGTCGGATTTG 784
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 411 CTCCCGGAAACCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTTG 470
Query 785 GCTCCGCCGCTCCTGGATCCAAGCTCGATTCTTCTTACACCAAATCCGTTAAACAAATCC 844
||||||||||| | || ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 471 GCTCCGCCGCTTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATCC 530
Query 845 CTTACAACATCTCCGTTCTCGAAATCAACGCTCCGATCATCGCTCCCGGAATCTTAACCG 904
||||||||||||| | ||||| || | ||||||||||||||||||||| | |||||||
Sbjct 531 CTTACAACATCTCAATCCTCGAGATTGATGCTCCGATCATCGCTCCCGGAGTTTTAACCG 590
Query 905 CACCTGCTCCTTCTTCCGGCGGTGTTAACAACATCACCGGACTT-CTCGAGAAAGCCGGT 963
| ||||||||||| || | ||| || | |||||||||| || ||||| |||||||||
Sbjct 591 CTCCTGCTCCTTCCGCCTCCT-TGTCAA-A-CATCACCGGA-TTACTCGAAAAAGCCGGT 646
Query 964 TGCAAAACCTTCGCGAATTTGCTCGTATCGAGTGGTGTTCTTAAAACCTACGAATCCACC 1023
||||||||||| || |||||||| || || ||||| || || || || ||||||||| ||
Sbjct 647 TGCAAAACCTTTGCTAATTTGCTTGTCTCAAGTGGAGTACTCAAGACTTACGAATCCGCC 706
Query 1024 GTTGAAAAAGGTTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTAAAGGTGTA 1083
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 707 GTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTGAAGGTGTA 766
Query 1084 CCAGATCTGACGAACCTCACGCAAGCTGAGGTGGTCTCGCTCCTAGAGTATCACGCCCTC 1143
|||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 767 CCAGATCTGACGAAGCTCACACAAGCTGAGGTAGTCTCGCTCTTAGAGTATCACGCCCTC 826
Query 1144 GCTGAATACAAACCCAAAGGATCGTTGAAGAATAACAAAGA-CGCTATCTCCACTTTAGC 1202
||||| || ||||| ||||| || ||||||| |||||| || | ||||||||| |||||
Sbjct 827 GCTGAGTATAAACCTAAAGGCTCATTGAAGACTAACAA-GAACAATATCTCCACGTTAGC 885
Query 1203 CACTAACGGCGCCGGTAAATACGATTTAACGACGTCAACTTCTGGCGACGAGGTTATCCT 1262
||||||||||||||| |||| |||| ||||||| || || || |||||||| ||||| ||
Sbjct 886 CACTAACGGCGCCGGAAAATTCGATCTAACGACCTCTACCTCCGGCGACGAAGTTATTCT 945
Query 1263 CCATACCGGTGTTGGTCCGTCGAGACTCGCCGACACGGTGGTCGATGAGACACCTGTCGT 1322
||| ||||| |||| ||||||||||||||| ||||| ||| |||| | ||| || || ||
Sbjct 946 CCACACCGGCGTTGCTCCGTCGAGACTCGCGGACACTGTGCTCGACGCGACTCCGGTTGT 1005
Query 1323 GATATTCACGGTGGATAATGTACTCCTCCCCACCGAGCTTTTTGGAAAGTCTCCATCTCC 1382
||||||||| ||||||||||| || ||||| | ||||| || ||||| ||| ||||||
Sbjct 1006 GATATTCACTGTGGATAATGTCCTTCTCCCTGCTGAGCTATTCGGAAAATCTAAATCTCC 1065
Query 1383 GGCGCCGGCACCGGCACCGGAGCCAGTGAGTGCACCGACCCCGTCTCCGGCTAATGCACC 1442
| ||||||||||| || |||||||| | |||| | ||| | ||||
Sbjct 1066 ATCTCCGGCACCGGCGCCTGAGCCAGT---T--ACCG-CACCG---------A---CACC 1107
Query 1443 GTCTCCAGTGGAAGCACCTTCTCCAACTGCAGCTTCTCCGCCAGCACCTCCGGTGGATGA 1502
||||||| ||| |||||||| || || |||||||| || || ||||||||| ||| ||
Sbjct 1108 ATCTCCAGCGGATGCACCTTCACCCACCGCAGCTTCACCACCGGCACCTCCGACGGACGA 1167
Query 1503 ATCTTCGCCGGAAGGAGCCCCGTCAGACTCGCCGACAAGTTCAGAGAACAGTAA-TGC-G 1560
|| | | |||| | || || ||||||||||| ||| |||||| ||||||||| | | |
Sbjct 1168 GTCA-C-C-GGAAAGTGCTCCTTCAGACTCGCCAACAGGTTCAGCGAACAGTAAGT-CAG 1223
Query 1561 AAAAACGCAGCGTTTCACGTGAAGG-CTTC-TGCGTTGTTCACCGCATTGGT 1610
|| ||||||| || ||||| | | | | |||||||||||||||||||
Sbjct 1224 CTAA-CGCAGCGGTTGGCGTGA-GCACACCGT-CGTTGTTCACCGCATTGGT 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91113989175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5