BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486567
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60910.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1520 0.0
> AT3G60910.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:22501698-22503372
FORWARD LENGTH=978
Length=978
Score = 1520 bits (823), Expect = 0.0
Identities = 897/931 (96%), Gaps = 11/931 (1%)
Strand=Plus/Plus
Query 1 AGAGAGATGCAGAGGGACGTGTCGAGCTGCAACACTTACAACTATGGAGACGCTCTCTAT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 AGAAAGATGCAGAGGGACGTGTCGAGCTGCAACACTTACAACTATGGAGACGCTCTCTAT 83
Query 61 TGGGACGCTCGTTACGTGCAAGACGCGCTTTCTTTCGACTGGTACCAACGTTACTCTTCT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 84 TGGGACGCTCGTTACGTGCAAGACGCGCTTTCTTTCGACTGGTACCAATGTTACTCTTCT 143
Query 121 CTCCGCCCTTTTGTCCGCAGCTTCGTCTCTACTTCTTCACGAGTCCTCATGGTTGGCTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CTCCGCCCTTTTGTCCGCAGCTTCGTCTCTACTTCTTCACGAGTCCTCATGGTTGGCTGT 203
Query 181 GGCAACTCCCTGATGTCAGAGGATATGGTGAATGATGGGTATGAGGACATTATGAATGTT 240
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 204 GGCAACTCCCTGATGTCAGAGGATATGGTGAAGGATGGGTATGAGGACATCATGAATGTT 263
Query 241 GATATCTCCTCAGTGGCTATTGAGATGATGCAAACCAAATATGCATCTGTTCCTCAGCTC 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GATATCTCTTCAGTGGCTATTGAGATGATGCAAACCAAATATGCATCTGTTCCTCAGCTC 323
Query 301 AAATATATGCAAATGGATGTTAGAGATATGAGTTACTTTGCGGACGATTCCTTTGACACT 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 324 AAATATATGCAAATGGATGTTAGAGATATGAGTTACTTTGAAGACGATTCCTTTGACACT 383
Query 361 GTTATTGATAAAGGAACCCTTGATTCATTGATGTGTGGCAGTGATGCTCTTCTAAGTGCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 ATTATTGATAAAGGAACCCTTGATTCATTGATGTGTGGCAGTGATGCTCTTCTAAGTGCT 443
Query 421 TCGAGAATGTTGGGTGAAGTTAGCAGGCTGATTAAACCTGGAGGGACCTACTTTTTGATA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TCGAGAATGTTGGGTGAAGTTAGCAGGCTGATTAAACCTGGAGGGACCTACTTTTTGATA 503
Query 481 ACCTACGGTGATCCCAAAGTGAGAATGCCTCATTTGACTCGTTCTGCGTACAACTGGAAG 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 ACCTACGGTGATCCGAAAGTGAGAATGCCTCATTTGACTCGTTCTGCGTACAACTGGAAG 563
Query 541 ATCTCCTTATACATTATACCAAGACCAGGATTTAAACGGCCAGAAAGTTGCAGCTCGTCA 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 564 ATCTCCTTATACATTATACCAAGACCAGGATTTAAAAGGCCAGAAAGTTGCAGCTCGTCA 623
Query 601 GCAAAGTCGTGTATGGAAGCTATACCTATAACAAGTGAGGGAATGTTGCCACATGATTAT 660
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 624 GCAAAGTCTTGTATGGAAGCTATACCTATAACAAGTGAGGGAATGCTGCCACATGATTAT 683
Query 661 GTTCTGGAGGATCCTGATTCCCATTTTATTTACATATGCAAGAAGATGGACGAAGA--A- 717
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 684 GTTCTGGAGGATCCTGATTCCCATTTTATTTACATATGCAAGAAGAAGGATGAAGATGAA 743
Query 718 GAAGCTCAACTACCCTCATACCCATTAATGGCGGATGTTTTGTAGTGATGGCAT--AGAG 775
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 744 GAAGCTCAACTACCCTCATACCCATTAATGGAGGATGTTTTGTAGTGATGGCACGCAGAG 803
Query 776 GCTAAAACAATGCAAAATTGTGCATGTATGTTTTTGTCTTCTTGATCCCCATGTAGATCA 835
||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| |||| ||
Sbjct 804 GCTCAAACAATGCAAAATTGTGCATGTGTGTTT--GTCTTTTTGATCCCCATTTAGACCA 861
Query 836 GCCGATCTATTGTTGTATTTTGTATGTGTCTTGTGATCTTATCCCAATTGATAGGTCCGA 895
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 862 GTCGATCTATTGTTGTATTTT--ATGTGTCTTGTGATCTTATCCCAATTGATAGGTCCGA 919
Query 896 GTCG--GAATTGCTCTATAAACTCATAATAT 924
||| |||||||||||||||||||||||||
Sbjct 920 GTCTCAGAATTGCTCTATAAACTCATAATAT 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5