BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486570
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61040.1 | Symbols: CYP76C7 | cytochrome P450, family 76, su... 1487 0.0
> AT3G61040.1 | Symbols: CYP76C7 | cytochrome P450, family 76,
subfamily C, polypeptide 7 | chr3:22593973-22596125 REVERSE
LENGTH=1598
Length=1598
Score = 1487 bits (805), Expect = 0.0
Identities = 931/990 (94%), Gaps = 15/990 (2%)
Strand=Plus/Plus
Query 481 CATCATTCATCACATCACTCACTTAATATAATCTCGAACGCTCTGTTTTCCAAAAACCTC 540
||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 524 CATCATTCATCACATCACT--C--AATATAATCTCGAACGCTCTGTTTTCCACAAACCTC 579
Query 541 TCAAACTTTGATGACTTAAAGACATCTCACGATTTCCATAACGTGGTGGTTCGGATGATG 600
||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 580 GCAAACTTTGATGACTCAAAGACATTTCACGATTTCCAAAACGTGGTGATTCGGATGATG 639
Query 601 GAGATCTCCGGAAAACCCAACCTCGCTGATTTCTTCCCTTTTCTTGGGTTTCTTGATCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GAGATCTCCGGAAAACCCAACCTCGCTGATTTCTTCCCTTTTCTTGGGTTTCTTGATCTG 699
Query 661 CAAGGAGCTAGAAAAGAAGCGAGGCTATTGATGCACAAACTGTTTAGGGTTTTTCAAGAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 700 CAAGGAGCTAGAAAAGAAGCGAGGCTATTGATGCACAAACTGTTTAGGGTTTTTCAAGGA 759
Query 721 CTCATCGATACAAAGAGATCATCAAATGCTTCGAGAAACAACAACGATATGTTAGATTCT 780
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 760 TTCATCGATACAAAGAGATCATCAA---CTTCGAGAAATAACAACGATATGTTAGATTCT 816
Query 781 CTTTTGGATATTGCTCATGAGGAGGAGTCAGAACTCGATGACAATAATATCAAACATCTG 840
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 817 CTTTTGGATATTGCTCATAAGAAGGAGTCAGAACTCGATGACAATAATATCAAACATCTG 876
Query 841 CTTCTCGACTTGTTTCTGGCGGGAGTAGACACGAGTTCGAGTGCAGTGGAATGGGCTATG 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 877 CTTCTCGACTTGTTTCTGGCGGGAGTAGACACGAGTTCGAGTGCGGTGGAATGGGCTATG 936
Query 901 GCGGAGTTGCTTCAAAACCCTAAGATGATAGTGAAAGTTCAAGAAGAGATAAGACAAGTG 960
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GCGGAGTTACTTCGAAACCCTAAGATGATAGTGAAAGTTCAAGAAGAGATAAGACAAGTG 996
Query 961 ATAGGGCTAAACGGCATCGTTCAAGATCTGGATATCGTTAAATTACCTTATTTACAAGCA 1020
||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 997 ATAGGGCTAAAGGGCACCGTTCAAGATCTTGATATCGTTAAACTACCTTATTTACAAGCA 1056
Query 1021 GTTGTGAACGAGAGTCTTCGTTTGCATCCGCCTGCTCCTTTTCTAATCCCTCGAAAATCC 1080
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1057 GTTGTGAAAGAGAGTCTTCGTTTGCATCCGCCTGCTCCTTTCCTCGTCCCTCGAAAATCA 1116
Query 1081 GA-TACTGATGATGTCCGAATTTTTGAGTTCCTCATTCCTAAGAATACTCAGGTTCTTGT 1139
|| | |||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1117 GAGT-CTGATGATGTCCAAATTTTCGAGTTCCTCATTCCTAAGAATACTCAGGTTCTTGT 1175
Query 1140 GAACGTGTGGGCAATAGGACGAGATCCAAACGTGTGGGATAATCCGAAGCAGTTCGAGCC 1199
|||||||||||||||||| |||||||| || |||||| | ||||||| ||||||||||||
Sbjct 1176 GAACGTGTGGGCAATAGGGCGAGATCCGAATGTGTGGAAGAATCCGACGCAGTTCGAGCC 1235
Query 1200 AGAGAGGTTTTTGGGAAGAGGAATCGATGTGAGAGGTAATAATTTTGAGTTGATTCCGTT 1259
|||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||
Sbjct 1236 AGAGAGGTTTTTGGGAAGAGGAATAGATGTGAAAGGTAATCATTTTGAGCTGATTCCGTT 1295
Query 1260 TGGAGCTGGACGAAGGATCTGTCCAGGAATGCCACTAGCGTTTAGGATAATGCATCTAGT 1319
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1296 CGGAGCTGGACGACGGATTTGTCCAGGAATGCCACTCGCGTTTAGGATAATGCATCTAGT 1355
Query 1320 TCTTGCGTCTCTTCTCTATGGCTTTGACTGGGAGTATCAAAACGGCGTAGTTCCTGAAGA 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1356 TCTTGCGTCTCTTCTCTATGGCTTTGACTGGGAGTATCAAAACGGCGTAGTTCCTGAAAA 1415
Query 1380 TGTGGATATGAACGAGGCCTTCGGTGTCGGTGCTACCTTGCACAAAGCCAAACCATTATG 1439
|||||||||||| |||||||| || | ||||||||||||||||||| ||||||||||
Sbjct 1416 TGTGGATATGAATGAGGCCTT---TG--G-TGCTACCTTGCACAAAGCCGAACCATTATG 1469
Query 1440 TGTCGTGCCTATCAAGAAACATGTTTGACA 1469
| |||||||||||||||||| |||||||||
Sbjct 1470 TATCGTGCCTATCAAGAAACGTGTTTGACA 1499
Score = 706 bits (382), Expect = 0.0
Identities = 451/483 (93%), Gaps = 9/483 (2%)
Strand=Plus/Plus
Query 1 ATGGATATCGTAGCAATAGTATTGTTTCTGCTCCTCTGT-TTCTTTATCTTCTTCTTTTT 59
|||||||| |||||||||||||||| |||||| || | | |||||| |||||||| |||
Sbjct 1 ATGGATATTGTAGCAATAGTATTGTCTCTGCT-CTTTATCTTCTTTCTCTTCTTC--TTT 57
Query 60 CTTCTACACCACCGGAAAATAC-TGTTCCGGTGGAGCCAAGAATCCACCGGGTCCTTCAG 118
||||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||
Sbjct 58 -TTCTACACCACCGGAAAAT-CATGTCCCGGTGGAGCCAAGAACCCACCGGGTCCTTCAA 115
Query 119 GGCTATCTCTGCTTCGTAACATCCTTCAAACTGTTGAAAAACCTCACCGTTCACTTGTCG 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 116 AGCTATCTCTGCTTCGTAACATCCTTCAAACTGTTGAAAAACCTCACCGTTCACTTGCCG 175
Query 179 ATCTATCAAGGATTTACGGAAGCGTAATGAGTCTTAAGCTTGGTTGTTTGACCACGGTGG 238
|||| ||||| |||||||||||||| |||||| |||||||||| ||||||||||| ||||
Sbjct 176 ATCTCTCAAGAATTTACGGAAGCGTTATGAGTTTTAAGCTTGGCTGTTTGACCACAGTGG 235
Query 239 TCATATCTTCACCGGAAGCAGCAAAAGAAGTGCTGAAAACACATGATCATGTCTTGTCTT 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCATATCTTCACCGGAAACAGCAAAAGAAGTGCTGAAAACACATGATCATGTCTTGTCTT 295
Query 299 ACCGAGTCTCCAGTGACCCGGTTCGAGCCGCTGGTCATCACGAGCTTTCCTTGCTCTGGC 358
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATCGAGTCTCCAGTGACCCGGTTCGAGCCGCTGGTCATCACGAGCTTTCCTTGCTCTGGA 355
Query 359 TTCCTCCGTTGGCTCGTTGGCGGTTTCTACGAAAGATAACGAGGAACCAATTATTCTCAA 418
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 356 TTCCTCCGTTGGCTCGTTGGAGGTTTCTACGAAAGATAACGAGGAACCAATTATTCTCAA 415
Query 419 CGCAACGTTTAGAAGCAACCAGTGGC-ATAAGGACGAGGAAGGTGCAAGAACTAATGAGC 477
|||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||| |
Sbjct 416 CGCAACGTCTAGAAGCAACCAGTG-CTATAAGGACGAGGAAGGTGCAAGAACTCATGAAC 474
Query 478 TTC 480
|||
Sbjct 475 TTC 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5