BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486574
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61060.2 | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A1... 1871 0.0
AT1G63090.1 | Symbols: AtPP2-A11, PP2-A11 | phloem protein 2-A1... 115 1e-24
> AT3G61060.2 | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13
| chr3:22602910-22604578 FORWARD LENGTH=1374
Length=1374
Score = 1871 bits (1013), Expect = 0.0
Identities = 1226/1321 (93%), Gaps = 46/1321 (3%)
Strand=Plus/Plus
Query 1 CAGGATTATATAATTGTTAGGCTCAGGAGAATTGACC-TTTGAATATTTCATACGGTTTA 59
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1 CAGGATTATATAATTGTTAGGCTCAGGAGAATTGACCTTTTGAATATTTCATACGG-TTA 59
Query 60 AAAAATTCTTCTATATAAACTGAAGATGCTTTGAATA-TTTGTATTCTCTGTGTATGTTC 118
|||||||||||||||| | | ||| ||||||||||| |||||| |||| |||||||||
Sbjct 60 AAAAATTCTTCTATAT--A-TAAAGTTGCTTTGAATATTTTGTAGTCTC--TGTATGTTC 114
Query 119 AAAACCG--T----AT---------AAAAAGCTTCCTTTATTTGtttttttGAGTTTTCG 163
||||||| | || |||||||||||||| |||| |||||||||||||||
Sbjct 115 AAAACCGTTTAACAATAACAACAACAAAAAGCTTCCTTT-TTTG-TTTTTTGAGTTTTCG 172
Query 164 TTGATCGATTGG-TT-AATTCTGTCATATCAATTTGTTCTCGATTCTTCGCGGCCATGCA 221
| |||||||||| || ||| ||||| ||||||||||||||||||||| |||| |||||||
Sbjct 173 TCGATCGATTGGTTTAAATCCTGTCGTATCAATTTGTTCTCGATTCTCCGCGACCATGCA 232
Query 222 AATTTAATGTTTTCGTTTGTTTTTGGTAGTGATTATGGGCGCGAATATCTCGGGAGGTTT 281
||||| | | || || | |||| || | | |||||||||||||||||||||||||
Sbjct 233 AATTT-A-G-GGTC-TTCG-TTTT-GT--T--TGATGGGCGCGAATATCTCGGGAGGTTC 282
Query 282 GCCGGAGTTTGACCGGGACGGTGACGTTTACTCGACGAAACCCAGATTGGTGGATTTACC 341
||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 283 ACCGGAGTTTGACCGGAACGATGACGTTTACTCGAGGAAACTCAGATTGGTGGATTTACC 342
Query 342 GGAGAATTGTGTAGCGTTGATTATGACACGGCTTGATCCACCGGAGATTTGTAGGCTTGC 401
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 343 TGAGAATTGTGTAGCGTTGATTATGACACGGCTTGATCCACCTGAGATTTGCCGGCTTGC 402
Query 402 TCGTCTCAACAGGATGTTCCGTCGCGCTTCGTCAGCTGATTTCATATGGGAATCAAAGTT 461
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 403 TCGTCTCAACAGGATGTTCCGTCGCGCTTCCTCAGCTGATTTCATTTGGGAATCAAAGTT 462
Query 462 GCCTTCGAATTATCGTGTTATTGCACACAAGGTGTTTGATGAAATTACTCTGAGGAAATT 521
|||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 463 GCCTGCGAATTATCGTGTTATTGCACACAAGGTGTTCGATGAAATTACTCTGACGAAATT 522
Query 522 AATAAAGAAAGATCTTTATGCGAAGCTTAGCCGGCCTAATCTCTTCGACGATGGCAC-AA 580
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 523 AATAAAGAAAGATCTTTATGCAAAGCTTAGCCAGCCTAATCTCTTCGACGATGGCACAAA 582
Query 581 --AGGAATTGTGGATAGATAAGAACACGGGTCGTCTTTGTTTATCTATTTCTTCAAAGGC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GCAGGAATTGTGGATAGATAAGAACACGGGTCGTCTTTGTTTATCTATTTCTTCAAAGGC 642
Query 639 ACTAAGGATTACTGGAATTGATGATCGGAGATACTGGAGTCATATCCCAACCGATGAATC 698
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 643 ACTAAGGATTACTGGAATTGATGATCGGAGATACTGGAGTCATATCCCAACTGATGAATC 702
Query 699 CAGGTTCCAGTCAGTTGCTTATGTTCAACAGATATGGTGGTTTGAAGTAGGAGGAGAGTT 758
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CAGGTTCCAGTCAGCTGCTTATGTTCAACAGATATGGTGGTTTGAAGTAGGAGGAGAGTT 762
Query 759 TGAGATCCAGTTTCCATCTGGAATATACAGTCTCTTCTTCCGTATCCAGCTCGGTAAAAC 818
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 763 TGAGATCCAGTTTCCATCTGGAACATATAGTCTCTTCTTCCGTATCCAGCTCGGTAAAAC 822
Query 819 ATCGAAGAGGCTTGGAAGGAGGATCTGCAACTCTGAACATATTCATGGATGGGACATAAA 878
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 823 ATCAAAGAGGCTTGGAAGGAGGATCTGCAACTCTGAACACATTCATGGATGGGACATAAA 882
Query 879 ACCTGTGAGGTTCCAGCTCGCCACTTCGGACAACCAACAAGCTGTTTCATTGTGTTATCT 938
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 883 ACCTGTAAGGTTCCAGCTCGCCACTTCGGACAACCAACAAGCTGTATCATTGTGTTATCT 942
Query 939 GAACAAGAACCCTGGGAGCTGGAGTCACTATCACGTTGGAGATTTCAAAGTGACAAATCC 998
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GAACAACAACCCTGGGAGCTGGAGTCACTATCACGTTGGAGATTTCAAAGTGACAAATCC 1002
Query 999 AGATACATCAACCGGAATCAAATTCTCGATGACTCAAATCGATTGCACTCACACGAAAGG 1058
|||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1003 AGATGTATCAACAGGAATCAAATTCTCCATGACTCAAATCGATTGCACTCACACGAAAGG 1062
Query 1059 TGGGCTATGCATAGACTCTGTTCTTATATTACCTAAAGACTGTGCAAAAGAAGTCATTGG 1118
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1063 TGGGCTATGCATAGACTCTGTTCTTATATTACCTAAAGAATGTGCAAAAGAAGTCATTGG 1122
Query 1119 ATCACTATAGTTTTGTAGATATAGAGTGAGAGATTGTT-GTAAAGGGTGAGAGAATGttt 1177
||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | | |
Sbjct 1123 ATCACAATAGTTTTGTAGATATAGAGTGAGA--TTGTTTGTAAAGGGTGAGAGA-T-TAT 1178
Query 1178 ttttCAGTGAAACATTCACTATACTCTGCTTTTTTCTTGATCTGGGATGCATTCTCAAGA 1237
||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 1179 TTTTCAGTGAAACATTCACTATACTGTTTTTTTTTCTTGATCTGGGCTGCATTCTCAAGA 1238
Query 1238 TGAATCTCAGATCTGGAACTTGTGTACACATGGTTGGGTTGTCTCTAGTTTTGTCTGTAG 1297
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TGAATCTCAGATCTGGAACT-GTGTACACATGGTTGGGTTGTCTCTAGTTTTGTCTGTAG 1297
Query 1298 T 1298
|
Sbjct 1298 T 1298
> AT1G63090.1 | Symbols: AtPP2-A11, PP2-A11 | phloem protein 2-A11
| chr1:23391063-23392851 REVERSE LENGTH=1332
Length=1332
Score = 115 bits (62), Expect = 1e-24
Identities = 185/242 (76%), Gaps = 18/242 (7%)
Strand=Plus/Plus
Query 652 GGAATTGATGATCGGAGATACTGGAGTCATATCCCAACCGATGAATC-CAGGTTC-CAGT 709
|||||||||||||||||||||||||||||||| || | ||||| || | | || | |
Sbjct 639 GGAATTGATGATCGGAGATACTGGAGTCATATTCCGTCTGATGATTCTC-GATTTGCT-T 696
Query 710 CAGTTGCTTATGTTCAACAGATATGGTGGTTTGAAGTAGGA-GGAGAGTTTGAGATCC-A 767
|||| ||||||||||||||||| ||||||||| |||| | | ||||| |||| ||| |
Sbjct 697 CAGTAGCTTATGTTCAACAGATCTGGTGGTTTCAAGTTG-ATGGAGAAATTGATTTCCCA 755
Query 768 GTTTCCATCTGGAATATACAGTCTCTT-CTTCCGTATCCAGCTCGGTAAAACAT-CGAAG 825
|||||| |||||| |||||| | || |||| | | ||||| || ||| || | |||
Sbjct 756 -TTTCCAGCTGGAACCTACAGTGT-TTACTTCAGGCTTCAGCTAGGCAAACCAGGC-AAG 812
Query 826 AGGCTTGGAAGGA-GGATCT-G-CAACTCTGAACATATTCATGGATGGGACATAAAACCT 882
|| |||| ||| || | | | || | | ||||| ||||||| ||| |||| ||||||
Sbjct 813 CGGTTTGGTTGGAAGGTTGTTGACA-C-C-GAACAGGTTCATGGCTGGAACATTAAACCT 869
Query 883 GT 884
||
Sbjct 870 GT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65913315585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5