BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486577
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61070.1 | Symbols: PEX11E | peroxin 11E | chr3:22604602-226... 1563 0.0
> AT3G61070.1 | Symbols: PEX11E | peroxin 11E | chr3:22604602-22606766
REVERSE LENGTH=1210
Length=1210
Score = 1563 bits (846), Expect = 0.0
Identities = 953/1004 (95%), Gaps = 10/1004 (1%)
Strand=Plus/Plus
Query 63 TCTCAATTG--T-ATCATCTCCTGGGTCGTCG-TAACAGAGATCATCTAGAAGAAAGCAT 118
||||||||| | ||||||||||||||||||| || | | ||||||||||||||||||||
Sbjct 187 TCTCAATTGTATAATCATCTCCTGGGTCGTCGTTATC-GTGATCATCTAGAAGAAAGCAT 245
Query 119 GACTACACTAGATTTGTCCAGAGCCGAGCTTGCTCTTATTGTTCTCTATTTGAACAAAGC 178
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GACTACACTAGATTTGACCAGAGCCGAGCTTGCTCTTATTGTTCTCTATTTGAACAAAGC 305
Query 179 TGAGGCTAGAGATAAGATATGCAGAGCTATCCAGTATGGTTCCAAATTCTTGAGCGGTGG 238
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 306 TGAGGCTAGAGATAAGATATGCAGAGCTATCCAATATGGTTCCAAATTTTTGAGCGGTGG 365
Query 239 GCAGCCTGGTACTGCTCAAACTGTTGACAAAAACACCAGCTTGGCTCGAAAAGTTTTCCG 298
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 366 CCAACCTGGTACTGCTCAAACTGTCGACAAAAACACCAGCTTGGCGAGAAAAGTTTTCCG 425
Query 299 TCTTTTCAAGTTTGTCAATGATTTTCACGGTCTTATCAGCCCCGTGCCTAAAGGAACACC 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 426 TCTTTTCAAGTTTGTCAATGATTTTCACGGTCTTATCAGCCCCGTGCCTAAAGGGACTCC 485
Query 359 GCTTCCTCTTGTCTTACTCGGGAAGTCGAAGAATGCTCTCTTGTCTACCTTCTTGTTTCT 418
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 486 ACTTCCTCTTGTCTTACTCGGGAAGTCGAAGAATGCGCTCTTGTCTACCTTTTTGTTTCT 545
Query 419 TGATCAAATCGTCTGGCTTGGTAGATCCGGCATATATAAGAACAAAGAACGAACTGAATT 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 546 TGATCAAATCGTCTGGCTTGGTAGATCCGGCATATACAAGAACAAAGAACGAACTGAATT 605
Query 479 GCTTGGACGTATATCACTTTTCTGCTGGCTGGGATCATCCGTTTGTACAAGTGCAGTCGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GCTTGGACGTATATCACTTTTCTGCTGGCTGGGATCATCCGTTTGTACAAGTGCAGTCGA 665
Query 539 GATTGGTGAGCTTGGAAGGCTCTCTTCATCTATGAAGAAGATGGAAAAGGAACTCAAAGA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GATTGGTGAGCTTGGAAGGCTCTCTTCATCTATGAAGAAGATGGAAAAGGAACTCAAAGC 725
Query 599 TGACGATGAGCTGTATCGTGCTAAGCTTCAGAAATCAAACGACAGAACTCTAGCTTTGAT 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TGATGATGAGCTGTATCGTGCTAAGCTTCAGAAATCAAACGACAGAACTCTAGCTTTGAT 785
Query 659 TAAATCAAGCATGGACATTGTTGTAGCCATTGGTCTCCTTCAATTAGCTCCAAAGACGGT 718
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 786 TAAATCAAGCATGGACATTATTGTAGCCATTGGTCTCCTTCAGTTAGCTCCAAAGACGAT 845
Query 719 TAGTCCTCGTGTCACTGGCGCTTTCGGGTTTACCACCTCACTTATCTCTTGTTATCAGTT 778
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TAGTCCTCGTGTCACTGGTGCTTTCGGGTTTACCACCTCACTTATCTCTTGTTATCAGTT 905
Query 779 GCTTCCGTCGCGCCCCAAGTTGAAGACACCTTGAAGACGGAAGAAACTTGTTCTCTAGAC 838
|||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 906 GCTTCCATCGCGCCCCAAGTTGAAGACACCTTGAAGAAGGAATAAGCTTGTTCTCTAGAC 965
Query 839 TTTCAGAATAATTGTTTCATATTCATTAGTAAACCTGTTGTGTTCAGGTATTCTAAGGAG 898
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 966 TTTCAGAATAATTGTTTCATATTCATCAGTAAACCTATTGTGTTCAGGTATTCTAAGGAG 1025
Query 899 TCTATGTTGCTCCTTTGAATGAATTTGCTGCTCTTATA-CTCCTTTGCAAGAATATTGAT 957
|||||||| ||||||||||||||||||||||||||||| | | |||||||||||| ||||
Sbjct 1026 TCTATGTTCCTCCTTTGAATGAATTTGCTGCTCTTATAACGCGTTTGCAAGAATAATGAT 1085
Query 958 AATTTTTATAATAAGATTTTTAATTATTATACATCCTCAAGATTTCTTGATTAGAAATTT 1017
|| ||||| ||||||||| | |||| ||||||| ||||||||| ||||||||||||||
Sbjct 1086 AAGTTTTAGAATAAGATT---A-TTATGATACATCTTCAAGATTTTTTGATTAGAAATTT 1141
Query 1018 GTGTTTGTTTCTCATTTTGGTCAAGTCTCTGTTTCTACATAGTA 1061
||||||||||||||||||| |||| ||||||| ||||||||||
Sbjct 1142 GTGTTTGTTTCTCATTTTGAACAAGACTCTGTTCCTACATAGTA 1185
Score = 87.9 bits (47), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1 ATAGTTTCTATCTCCGATGACACAAAACGAGGAAGATAATTTGACATTATAAG 53
||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 4 ATAGTTTCTATCTCCGATGACACAAAACGAGGAAGATTATTTGACATTTTAAG 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5