BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486578
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61080.1 | Symbols: | Protein kinase superfamily protein | ... 1842 0.0
> AT3G61080.1 | Symbols: | Protein kinase superfamily protein
| chr3:22607130-22609099 FORWARD LENGTH=1219
Length=1219
Score = 1842 bits (997), Expect = 0.0
Identities = 1139/1205 (95%), Gaps = 20/1205 (2%)
Strand=Plus/Plus
Query 3 GGAGAAGAAGAAAATGGCGGTGGCGTCTCTTAGTATTTGCTTCTCTGCTCGACCAAATCT 62
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 10 GGAGAAGAAGAAAATGGCGGTGGCTTCTCTTAGTATTTGCTTCTCTGCTCGGCCACATCT 69
Query 63 TCTTCTTTGCAACTTATCTCCTCGACCCAAAATTT-TTGCTATGGCTGCAATGAGTGAGG 121
||||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 70 TCTTCTTCGCAACTTCTCTCCTCGACCC-AAATTTGTTGCTATGGCTGCAATGAGTGAGG 128
Query 122 ATCCAATTCGTGAATGGATTCTTACACAAGGAAAAGCGACTCAGATAACAAAGATTGGTT 181
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 129 ATCCAATTCGTGAATGGATTCTTACAGAAGGAAAAGCAACTCAGATAACAAAGATTGGTT 188
Query 182 CTGTTGGTGGTGGATGCATTAATCTTGCAAGCCATTATCACACTGATGCTGGTTCTTTCT 241
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 189 CTGTTGGTGGTGGATGCATTAATCTTGCAAGTCATTATCAAACTGATGCTGGTTCTTTCT 248
Query 242 TCGTTAAAACTAACAGGAGTATTGGACCTGCAATGTTTGAGGGAGAGGCTCTTGGTCTTG 301
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 249 TCGTTAAAACTAACAGGAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTG 308
Query 302 AGGCTATGTATGAAACCAGAACAATCCGTGTGCCTAAGCCACACAAAGTTGGGGAATTGC 361
||||||||||||||||||||||||||||||| || || |||||||||| |||||||||||
Sbjct 309 AGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAAGCTGGGGAATTGC 368
Query 362 CAACAGGTGGGTCTTATATAATCATGGAATTTATAGATTTTGGGGGATCAAGAGGCAACC 421
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 369 CAACAGGTGGATCTTATATCATCATGGAGTTTATAGATTTTGGGGGATCAAGAGGCAATC 428
Query 422 AGGCTGAATTAGGAAGGAAGCTAGCTGAGATGCATAAAGCCGGGAAATCTTCGAAAGGCT 481
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 429 AGGCTGAATTAGGAAGGAAGCTAGCTGAGATGCATAAAGCCGGGAAAACTTCGAAAGGTT 488
Query 482 TTGGCTTTGAGGTTGACAACACTATTGGCAGTACCCCGCAGATAAATACTTGGTCATCGG 541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 489 TTGGCTTTGAGGTTGACAACACTATTGGCAGTACCCCGCAGATCAATACTTGGTCTTCGG 548
Query 542 ATTGGATTGAATTTTATGGTGAGAAGAGATTGGGTTACCAGCTTAAGTTAGCTAGGGATC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ATTGGATTGAATTTTATGGTGAGAAGAGATTGGGTTACCAGCTTAAGTTAGCTAGGGATC 608
Query 602 AGTATGGTGACTCTGCAATTTATCAGAAAGGTCATACACTGATACAGAACATGGC-CTCT 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 609 AGTATGGTGACTCTGCTATTTATCAGAAAGGTCATACACTGATACAGAACATGGCAC-CT 667
Query 661 CTATTTGAGAATGTTGTCATAGAACCGTGTTTGTTACATGGTGATCTCTGGAGCGGGAAT 720
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 668 CTCTTTGAGAATGTTGTCATAGAACCGTGCTTGTTACATGGTGATCTCTGGAGCGGGAAT 727
Query 721 ATCGCATACGACACGAACAGTGAACCTGTCATTCTTGATCCTGCCTGTTACTATGGGCAT 780
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 728 ATCGCATACGACAAGAACAACGAACCTGTCATTCTTGATCCTGCCTGTTACTATGGGCAT 787
Query 781 AACGAGGCGGATTTTGGAATGTCGTGGTGCGCAGGATTTGGAGAATCTTTCTACAATGCC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AACGAGGCGGATTTTGGAATGTCGTGGTGCGCAGGATTTGGAGAATCTTTCTACAATGCC 847
Query 841 TATTTCAAGGTAATGCCGAAACAAGTGGGATATGAGAAGAGAAGGGATCTGTATCTGCTC 900
||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||
Sbjct 848 TATTTCAAGGTAATGCCAAAACAAGCGGGATATGAGAAGAGGAGGGATCTGTATTTGCTC 907
Query 901 TATCATTACTTGAATCATTATAACCTGTTTGGCTCGGGTTATCGATCATCTGCAATGTCG 960
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 908 TATCATTACTTGAACCATTATAACCTGTTTGGCTCGGGCTACCGATCATCTGCGATGTCA 967
Query 961 ATCATTGATGATTATCTACGGATGCTCAAAGCTTAAAATGAGGAGGGAA-GCTGCTGCTT 1019
||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 968 ATCATCGATGATTATCTACGGATGCTCAAAGCTTAAGATGAGGAGGGAAAGCTGCTGCTT 1027
Query 1020 ATAGGCTTTCTTTTATGCT-TGT-TT-GTGTGTTTGGTGTTATGTAAGGTGGTTTATACG 1076
||| ||||||||| ||| | ||| || ||||||| |||||||||||||||||||||||||
Sbjct 1028 ATATGCTTTCTTT-ATG-TGTGTATTTGTGTGTT-GGTGTTATGTAAGGTGGTTTATACG 1084
Query 1077 AAGAAAAATGTCTA--ATACATGTTTAAATCGATGATCTGGTTGTACATAGG-G-TGACA 1132
|||||| |||||| |||||||||||||||||||||||||||||||||||| | | |
Sbjct 1085 AAGAAAGATGTCTGTCATACATGTTTAAATCGATGATCTGGTTGTACATAGGTGGTAATG 1144
Query 1133 --ATGGAGAGAAGAATTCACAATCGATTTTAAACATTGTCAAATA-CTAACTAGTAATAA 1189
||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 1145 TGATGGAGAGAAGAATTCACAATCGATTTTAAACATTA-CAAATAAC-AACTAGTAATAA 1202
Query 1190 AAGCA 1194
|||||
Sbjct 1203 AAGCA 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5