BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486580
Length=550
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61100.1 | Symbols: | Putative endonuclease or glycosyl hyd... 723 0.0
> AT3G61100.1 | Symbols: | Putative endonuclease or glycosyl hydrolase
| chr3:22610437-22611321 REVERSE LENGTH=693
Length=693
Score = 723 bits (391), Expect = 0.0
Identities = 500/553 (90%), Gaps = 5/553 (1%)
Strand=Plus/Plus
Query 1 CTCTTCCACCGCCGCAGTTCTAAAACCCTAATTTATC-GGTTTTGGTCGAAACAATGGCC 59
||||||||||||||||| ||||||||||| |||| || ||| ||||||||||| ||| ||
Sbjct 2 CTCTTCCACCGCCGCAGATCTAAAACCCTGATTTCTCGGGTGTTGGTCGAAACCATGACC 61
Query 60 ACTGTGGAAGTGGAAAAGATAGTTGTCTTCTGGGACGTAGTAGAATGCCCACTCCCTGAT 119
|||| ||||| ||| ||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 62 ACTGAGGAAGAGGATAAGGTAGTCGTCTTCTGGGACGTCGTAGAATGCCCACTCCCTGAT 121
Query 120 GATCTCTTGCCTTCTTTGGTTTCTGGGAATATCGAACT-AGCTCTACAGAGACAGGGTTA 178
|||||| ||||||| |||||||| |||||||||| | ||||||| | |||||||||||
Sbjct 122 GATCTCGAGCCTTCTGAGGTTTCTGAGAATATCGAA-TCAGCTCTAGATAGACAGGGTTA 180
Query 179 TCTTCCTTGTAATGTGTCAATCAGGGTTTATGGTAAGAAGAATTATGAGTTCAAGGATGA 238
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 181 TCTTCCTTGTAATGTGTCAATCAGGGTTTACGGTAAGAAGAATCATGAGTTCAAGGATGA 240
Query 239 GTTTCTCCTCGCTAATATCATGTTCTTGCCCGCAGGAGATGCAAGTGCGAGATGTAAAAG 298
||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||| ||
Sbjct 241 GTTTCTCCTCGCTAATATCATGTTCGTACCCGCAGGAGATGCAAATGCGAGATATAATAG 300
Query 299 GATGGTGAAGGATATTGATAAATGGGCATTGGGCAATGGTGAATCACATTTGATGGTAAT 358
|||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||
Sbjct 301 GATGGTGAAGGATATTGATAAATGGGCATTGGACAATGATGAATCAGATTTGATGGTGAT 360
Query 359 CTCACGAGTCAACACGGAGTTCGCCACTTATCTCGCAGATTGGAAAGCGAGAGACTTGAA 418
||||||||||||| || ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 361 CTCACGAGTCAACTCGAAGTTCGCCACTTATCTCGCAGATTGGAAAGCCAAAGACTTGTA 420
Query 419 GATTCTCGGGGCA-AGGCCAGAAAACGCACCAGGAAAATGTAGCAATTGCAAAATGACGA 477
||| |||| ||| || |||||||| |||||||| ||||||||||| |||||| | ||||
Sbjct 421 CATTTTCGGAGCAGAG-CCAGAAAAAGCACCAGGGAAATGTAGCAACTGCAAAGTTACGA 479
Query 478 CTTTGGACGAGCTTTTCACTCAAGAATGGGTTTGGGAAAGCCTATCAGTTAGAGGAGACC 537
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 480 GTTTGGACGAGCTTTTCACTCAACAATGGGTTTGGGAAAGCCTATCACTTGGAGGAGACC 539
Query 538 CTATCACCAGAGC 550
|||||||| ||||
Sbjct 540 CTATCACCCGAGC 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26372927175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5