BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486581
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61110.1 | Symbols: ARS27A, RS27A | ribosomal protein S27 | ... 621 2e-177
AT3G61111.1 | Symbols: | Zinc-binding ribosomal protein family... 339 2e-92
AT2G45710.1 | Symbols: | Zinc-binding ribosomal protein family... 303 7e-82
> AT3G61110.1 | Symbols: ARS27A, RS27A | ribosomal protein S27
| chr3:22611634-22612904 FORWARD LENGTH=609
Length=609
Score = 621 bits (336), Expect = 2e-177
Identities = 442/488 (91%), Gaps = 28/488 (6%)
Strand=Plus/Plus
Query 2 CCTTTCTCTCTCGCTTATTGTTGCCGTTGCTTGCTATCTTTCGCCGTCGTCTCTTGAGAT 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 7 CCTTTCTCTCTCGCCTATTGTTGCCGTTGCTTGCTATCTTTCGCCGTCGTCTCTTTAGCT 66
Query 62 TCTTGCGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TCTTGCGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGA 126
Query 122 GAAGAGGAAGCACAAGCTCAAGCGTCTTGTTCAGTCTCCTAATTCCTTCTTCATGGATGT 181
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 127 GAAGAGGAAGCACAAGCTCAAGCGTCTTGTCCAGTCTCCCAATTCCTTCTTCATGGATGT 186
Query 182 GAAGTGCCAAGGCTGCTTCAACATCACGACTGTTTTCAGTCACTCGCAGACTGTTGTGAT 241
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 187 GAAGTGCCAAGGCTGCTTCAACATCACTACTGTTTTCAGTCACTCGCAGACTGTTGTGGT 246
Query 242 GTGCGGAAACTGCCAAACAATTCTGTGCCAGCCTACAGGAGGAAAGGCAAAACTCACCGA 301
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 247 GTGCGGAAACTGCCAGACAATTCTGTGCCAGCCTACAGGAGGAAAGGCAAAGCTCACCGA 306
Query 302 GGGATGCTCTTTCAGGAGAAAGGGAGATTGATTGAAGCAATCGTCAA--t--t------t 351
||||||||||||||||||||||| ||||||||||||||||| |||| | | |
Sbjct 307 AGGATGCTCTTTCAGGAGAAAGGGTGATTGATTGAAGCAATCATCAAAATAATGAAGGCT 366
Query 352 -tttt-tGTTT-T---------GTTGTTG--G-CTATGATATTATGTCTGGA-TCTTTAA 395
|||| | ||| | ||||||| | ||||||| |||| |||||| | |||||
Sbjct 367 GTTTTCTTTTTCTTTTTTTTTTGTTGTTGTTGGCTATGATGTTATCTCTGGAAT-TTTAA 425
Query 396 AATGTTTGGATTTTTAATATAATTAAGCAGGAGTTTGTTCTTTTACTTTTGAGATTATTC 455
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
Sbjct 426 AATGTTTGGATTTTTAATATAAGTAAGCAG-AGTTTGCTCTTTTACTTTTGAGATTATCC 484
Query 456 CCAAGTCT 463
||||||||
Sbjct 485 CCAAGTCT 492
> AT3G61111.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr3:22613230-22614002 REVERSE LENGTH=344
Length=344
Score = 339 bits (183), Expect = 2e-92
Identities = 275/318 (86%), Gaps = 12/318 (4%)
Strand=Plus/Plus
Query 7 CTCTCTCGCTTATTGTTGCCGTTGCTTGCTATCTTTCGCCGTCGTCTCTTGAGATTCTTG 66
||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 19 CTCTCTCGCGAATTGTTGCCGTTGCTTGCTAGCTTTCGCCGTCGTCTCTTGAGAGTCTTG 78
Query 67 CGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGA 126
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 79 CGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAATCCTCCGGCTGAGCTTGAGAAGA 138
Query 127 GGAAGCACAAGCTCAAGCGTCTTGTTC-AGTCTCCTAATTCCT-TCTTCATGGATGTGAA 184
||||||| ||||||||||||||||||| | || || ||||||| | |||||| ||| |
Sbjct 139 GGAAGCATAAGCTCAAGCGTCTTGTTCCA-TCACCAAATTCCTAT-TTCATGCTTGTTAG 196
Query 185 GTGC-CAAGGCTGCT-TCAACATCACGACTGTTTTCAGTCACTCGCAGACTGTTGTGATG 242
|||| | | ||| | |||||||||| ||| ||||||||||||| ||||| || ||| |
Sbjct 197 GTGCTCT-GACTG-TATCAACATCACAACTATTTTCAGTCACTCACAGACAGTCGTGGTA 254
Query 243 TGCGGAAACTGCCA-AACAATTCTGTGCCAGCCTACAGGAGGAAAGGCAAAACTCACCG- 300
|||||||| || || ||| |||||||||| ||||||||||| ||||| || ||||| |
Sbjct 255 TGCGGAAAGTGTCAGAACG-TTCTGTGCCAACCTACAGGAGGCAAGGCCAAGCTCACAGT 313
Query 301 AGGGATGCTCTTTCAGGA 318
||| ||||||||||||||
Sbjct 314 AGG-ATGCTCTTTCAGGA 330
> AT2G45710.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr2:18831161-18832211 FORWARD LENGTH=549
Length=549
Score = 303 bits (164), Expect = 7e-82
Identities = 234/268 (87%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 67 CGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGA 126
|||| ||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 78 CGAAAATGGTCCTTCAAAACGATATTGATCTGCTTAACCCTCCTGCTGAGCTCGAGAAGA 137
Query 127 GGAAGCACAAGCTCAAGCGTCTTGTTCAGTCTCCTAATTCCTTCTTCATGGATGTGAAGT 186
|||||||||||||||||||||||||||| || || ||||| || ||||||||||| ||||
Sbjct 138 GGAAGCACAAGCTCAAGCGTCTTGTTCAATCACCCAATTCGTTTTTCATGGATGTCAAGT 197
Query 187 GCCAAGGCTGCTTCAACATCACGACTGTTTTCAGTCACTCGCAGACTGTTGTGATGTGCG 246
| ||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||| |
Sbjct 198 GTCAAGGCTGCTTTAACATTACGACTGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTG 257
Query 247 GAAACTGCCAAACAATT-CTGTGC-CAGCCTACAGGAGGAAAGGCAAAACTCACCGAGGG 304
|||||||||| || || || ||| || || |||||||| |||||||| ||||| || ||
Sbjct 258 GAAACTGCCAGACT-TTGCTCTGCACACCC-ACAGGAGGGAAGGCAAAGCTCACTGAAGG 315
Query 305 ATGCTCTTTCAGGAGAAAGGGAGATTGA 332
|||||||||||||| |||| |||| |||
Sbjct 316 ATGCTCTTTCAGGAAAAAGTGAGACTGA 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22067541811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5