BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486583
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61120.1 | Symbols: AGL13 | AGAMOUS-like 13 | chr3:22618259-... 1160 0.0
> AT3G61120.1 | Symbols: AGL13 | AGAMOUS-like 13 | chr3:22618259-22620491
REVERSE LENGTH=915
Length=915
Score = 1160 bits (628), Expect = 0.0
Identities = 724/770 (94%), Gaps = 7/770 (1%)
Strand=Plus/Plus
Query 1 AAAGAAGAGACAGAGCGAG-G-GAGATGGGAAGAGGGAAAGTGGAAGTGAAGAGAATTGA 58
|||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAGAAGAGAGAGAGCGAGTGAGAGATGGGAAGAGGCAAAGTGGAAGTGAAGAGAATTGA 60
Query 59 GAACAAGACCACAAGACAAGTAACCTTCTCCAAAAGAAAAAGTGGTTTGCTCAAGAAAGC 118
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAACAAGATCACTAGACAAGTAACCTTCTCCAAAAGAAAAAGTGGTTTGCTCAAGAAAGC 120
Query 119 CTACGAACTCTCTGTTCTATGTGATGCAGAGGTTTCTCTCATAATCTTCTCCAACGGTGG 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CTACGAACTCTCTGTTCTTTGTGATGCAGAGGTTTCTCTCATAATCTTCTCCACCGGTGG 180
Query 179 CAAGCTCTACGAGTTCAGCAATGTCGGAATTGGCCGAACCATTGAGAGGTACTATCGCTG 238
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 181 CAAGCTCTACGAGTTCAGCAATGTCGGAGTTGGCAGAACCATTGAGAGGTACTATCGCTG 240
Query 239 TAAAAACAAT-TTGTTGGACAATAATGATACGCTTGAAGATACTCAGGGCTTGCGTCAAG 297
|||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TAAAGACAATCTT-TTGGACAAT---GATACGCTTGAAGATACTCAGGGCTTGCGTCAAG 296
Query 298 AGGTGACAAAGCTGAAATCCAAATATGAATCTCTTCTCCGCACTCATAGAAATTTGGTTG 357
||||||||||||| |||| |||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 297 AGGTGACAAAGCTCAAATGCAAATACGAATCTCTTCTTCGCACTCATAGGAATTTGGTTG 356
Query 358 GGGAAGATCTTGAAGGGATGAGTGTAAAGGAACTGCAGACGCTCGAGAGACAGCTAGAAG 417
||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||
Sbjct 357 GGGAAGATCTTGAAGGGATGAGTATAAAGGAATTGCAGACGCTGGAGAGACAGCTTGAAG 416
Query 418 GAGCTCTTTCCGCAACCCGAAAACACAAGACGCAGGTTGCGATGGAACAAATGGAAGAGC 477
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 417 GAGCTCTTTCCGCAACCCGAAAACAAAAGACGCAGGTTATGATGGAACAAATGGAAGAGC 476
Query 478 TTCGGAGAAAGGAGAGGGAGCTTGGAGATATAAACAATAAGCTTAAGCTTGAGACCGAAG 537
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 477 TTCGGAGAAAGGAGAGGGAGCTCGGAGATATAAACAATAAGCTAAAGCTTGAGACAGAAG 536
Query 538 ATCATGATTTTAGAGGCTTTCAAGACCTACTGCTTAACCCGGTGCTCACGGCCGGTTGTT 597
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 537 ATCATGATTTTAAAGGCTTTCAAGACCTACTGCTTAACCCGGTGCTCACCGCCGGTTGTT 596
Query 598 CCACTGATTTTGCGTTTCAATCATCTCATCAAAATTATATATTAGATTGCGACGTGGGAT 657
||||||||||| | || |||||| |||||||||||||||||| |||||| || | ||||
Sbjct 597 CCACTGATTTTTCCTTGCAATCAACTCATCAAAATTATATATCGGATTGCAACCTTGGAT 656
Query 658 ACCTTTTACAGATTGGGTTTCAACAACACTATGAGCAAGGTGAAGGATCTTCGGTGTCAA 717
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 ATTTTTTACAGATTGGGTTTCAACAACACTATGAGCAAGGTGAAGGATCTTCGGTGACAA 716
Query 718 AGAGTAATGCAAGAAGTGATGTTGAGACCAACTTTGTCCAATGATGGGTT 767
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 AGAGTAATGCAAGAAGTGATGCTGAGACCAACTTTGTCCAATGATGGGTT 766
Score = 69.4 bits (37), Expect = 5e-11
Identities = 50/56 (89%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 768 AGTCACGACGAAGCGTTTAGGTCATTTACTATAAGGACATACATACTCTTTTCTTT 823
|||||||||||||||||||||||||||||||| |||||||| | || |||| |||
Sbjct 792 AGTCACGACGAAGCGTTTAGGTCATTTACTATCGGGACATAC-T-CTTTTTTTTTT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5