BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486584
Length=2510
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61130.1 | Symbols: GAUT1, LGT1 | galacturonosyltransferase ... 3888 0.0
> AT3G61130.1 | Symbols: GAUT1, LGT1 | galacturonosyltransferase
1 | chr3:22621969-22625716 FORWARD LENGTH=2569
Length=2569
Score = 3888 bits (2105), Expect = 0.0
Identities = 2410/2549 (95%), Gaps = 53/2549 (2%)
Strand=Plus/Plus
Query 1 AATCGATAAAAGAGATCTGTGTC--AAGTACGCGTGAGGTTCTCTCTTCCCTGCAAACAA 58
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 4 AATCGATAAAAGAGATCTGTGTCAAAAGTACGCGTGAGGTTCTCTCTTCTCTGCAAACAA 63
Query 59 AAATCCTGGCGTTGATAGCGATTGGTTAATTGTCGGTGTATCAACGTTTTTCTGTTGCAC 118
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 64 AAATCCTGGCGTTGATAGCGATTGGTTAATTGTCGGTGAATCAACGTTTTTCTGTTACAC 123
Query 119 ACGTCAATCAATCATCA---tcttc-t--t-tcttcatac-tc-tcttc-t--tc-tt-- 163
| |||||||||||||| ||||| | | ||||| | | || || || | || ||
Sbjct 124 ATATCAATCAATCATCATCCTCTTCATACTCTCTTC-TTCTTCTTCATCGTAATCATTAG 182
Query 164 cttcaattcctagttttctcttcATCGCCGTTGTGCTAGAG-TTTGTCAGATCTCGCCGG 222
|||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 183 CTTCAATTCCGAGTTTTCTCTTCGTCGCCGTTGTGCTAGAGTTTTGTCAGATCTCGCCGG 242
Query 223 GAAATTCGCAATGGCGTTTTAGTCTGTTTACCTGTGAA--------G----C-CTGGATT 269
|||||| ||||||||||||||||||||||||||||||| | | |||||||
Sbjct 243 GAAATTAGCAATGGCGTTTTAGTCTGTTTACCTGTGAAGCTTTTGCGTAAACGCTGGATT 302
Query 270 CTTCTCAAA--TCTCTGACCTGATCTCTCATTAGATTCCGA--ATGGCGCTAAAGCGAGG 325
||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct 303 CTTCTCAAATCTCTCTCACCTGATCTCTTATTAGATTCCGAGGATGGCGCTAAAGCGAGG 362
Query 326 GCTATCTGGAGTTAACCGGATTAGAGGAAGTGGTGGTGGATCTCGATCTGTACTTGTTCT 385
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 363 GCTATCTGGAGTTAACCGGATTAGAGGAAGTGGTGGTGGATCTCGATCTGTGCTTGTGCT 422
Query 386 GCTCATCTTTTTCTGTGTTTTCGCACCTC-TTGTCTTCTTCGTTGGCCGAGGAGTGTACA 444
||||| |||||||||||||| ||||||| ||| |||||| ||||||||||||||||| |
Sbjct 423 TCTCATATTTTTCTGTGTTTTTGCACCTCTTTG-CTTCTTTGTTGGCCGAGGAGTGTATA 481
Query 445 TCGATTCCTCAACTGATTATTCAAATGCTTCTGTGAAGCAGAATCTTGACTGGAGAGAAC 504
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 482 TCGATTCCTCAAATGATTATTCAATTGTTTCTGTGAAGCAGAATCTTGACTGGAGAGAAC 541
Query 505 GTTTAGCAATGCAATCTGTTAGATCTCTTTTCTCGAAAGAGGTACTGGATGTTATCGAAA 564
||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||
Sbjct 542 GTTTAGCAATGCAATCTGTTAGATCTCTTTTCTCGAAAGAGATACTAGATGTTATAGCAA 601
Query 565 CTAGCACAGCTGATTTGGGTCCTCTTAGCCTTGATTCTTTCAAGAAAAACAATTTGTCTG 624
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 602 CCAGCACAGCTGATTTGGGTCCTCTTAGCCTTGATTCTTTTAAGAAAAACAATTTGTCTG 661
Query 625 CATCATGGCGGGGAGTTGGAGTAGATACCTCCTTTAGACATTCTGAGAACCCAACAACTC 684
|||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 662 CATCATGGCGGGGAACCGGAGTAGACCCCTCCTTTAGACATTCTGAGAATCCAGCAACTC 721
Query 685 CTGATATCAGATCTAATATCCTGAATGAAAAACGTGACAGCATTTCAAAAGACAGTAGCC 744
||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 722 CTGATGTCAAATCTAATAACCTGAATGAAAAACGTGACAGCATTTCAAAAGATAGTATCC 781
Query 745 ATCAGAAAGTTGAGACACCTACAAAGATTCACAGAAGGCAACTAAGAGAGAAAAGGCGTG 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ATCAGAAAGTTGAGACACCTACAAAGATTCACAGAAGGCAACTAAGAGAGAAAAGGCGTG 841
Query 805 AGATGCGAGCAAATGAGTTGGTTCAGCACAATGATGACACAATTTTGAAACTCGAAAATG 864
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 842 AGATGCGGGCAAATGAGTTAGTTCAGCACAATGATGACACGATTTTGAAACTCGAAAATG 901
Query 865 CGGCCATTGAACGCTCTAAATCTGTTGATTCTGCAGTCCTTGGTAAATACAGTATTTGGA 924
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTGCCATTGAACGCTCTAAGTCTGTTGATTCTGCAGTCCTTGGTAAATACAGTATTTGGA 961
Query 925 GAAGAGAAAATGAGAATGACAACTCTGATTCAAATATACGCTTGATGCGGGATCAAGTAA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GAAGAGAAAATGAGAATGACAACTCTGATTCAAATATACGCTTGATGCGGGATCAAGTAA 1021
Query 985 TAATGGCTAGAGTCTATAGTGGGATTGCAAAATTGAAAAACAAGAATGATTTGTTACAAG 1044
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1022 TAATGGCTAGAGTCTATAGTGGGATTGCAAAATTGAAAAACAAGAACGATTTGTTACAAG 1081
Query 1045 AACTCCAGGCCCGACTTAAGGACAGCCAACGGGTTTTGGGGGAATCAACATCTGATGCTG 1104
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1082 AACTCCAGGCCCGACTTAAGGACAGCCAACGGGTTTTGGGGGAAGCAACATCTGATGCTG 1141
Query 1105 ATCTTCCTCGGAGTGCACATGAGAAACTCAGAGCCATGGGTCAAGTCTTGGCTAAAGCTA 1164
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 ATCTTCCTCGGAGTGCGCATGAGAAACTCAGAGCCATGGGTCAAGTCTTGGCTAAAGCTA 1201
Query 1165 AGATGCAGTTATATGACTGCAAGTTGGTTACTGGAAAGCTGAGAGCAATGCTTCAGACTG 1224
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGATGCAGTTATATGACTGCAAGCTGGTTACTGGAAAGCTGAGAGCAATGCTTCAGACTG 1261
Query 1225 CCGACGAACAAGTCAGGAGCTTAAAGAAGCAGAGTACTTTTCTGGCTCAGTTAGCAGCAA 1284
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CCGACGAACAAGTGAGGAGCTTAAAGAAGCAGAGTACTTTTCTGGCTCAGTTAGCAGCAA 1321
Query 1285 AAACAATTCCAAATCCTATCCATTGCCTATCGATGCGCTTGACCATCGATTACTATCTTC 1344
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1322 AAACCATTCCAAATCCTATCCATTGCCTATCAATGCGCTTGACTATCGATTACTATCTTC 1381
Query 1345 TGTCTCCAGAGAAAAGAAAATTCCCTCGGAGTGAAAACCTAGAAAACCCTAATCTTTATC 1404
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TGTCTCCGGAGAAAAGAAAATTCCCTCGGAGTGAAAACCTAGAAAACCCTAATCTTTATC 1441
Query 1405 ATTATGCCCTCTTTTCTGACAATGTACTAGCTGCATCAGTGGTTGTTAACTCAACCATCA 1464
|||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1442 ATTATGCCCTCTTTTCCGACAATGTATTAGCTGCATCAGTAGTTGTTAACTCAACCATCA 1501
Query 1465 TGAATGCCAAGGATCCTTCTAAGCATGTTTTTCACCTTGTCACGGATAAACTGAATTTTG 1524
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1502 TGAATGCCAAGGATCCTTCTAAGCATGTTTTTCACCTTGTCACGGATAAACTCAATTTCG 1561
Query 1525 GAGCAATGAACATGTGGTTCCTCCTAAACCCACCCGGAAAGGCAACCATACATGTGGAAA 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 GAGCAATGAACATGTGGTTCCTCCTAAACCCACCCGGAAAGGCAACCATACATGTGGAAA 1621
Query 1585 ACGTTGATGAGTTTAAGTGGCTCAATTCATCTTACTGCCCTGTCCTTCGTCAGCTTGAAT 1644
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1622 ACGTCGATGAGTTTAAGTGGCTCAATTCATCTTACTGTCCTGTCCTTCGTCAGCTTGAAT 1681
Query 1645 CTGCAGCAATGAGAGAATACTATTTTAAAGCAGACCATCCAACTTCAGGCTCTTCAAATC 1704
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1682 CTGCAGCAATGAGAGAGTACTATTTTAAAGCAGACCATCCAACTTCAGGCTCTTCGAATC 1741
Query 1705 TGAAATATAGAAACCCAAAGTATCTATCCATGTTGAATCACTTGAGATTCTACCTCCCTG 1764
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 TAAAATACAGAAACCCAAAGTATCTATCCATGTTGAATCACTTGAGATTCTACCTCCCTG 1801
Query 1765 AGGTTTATCCCAAGCTGAACAAAATCCTCTTCCTGGACGACGACATCATTGTTCAGAAAG 1824
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1802 AGGTTTATCCCAAGCTGAACAAAATCCTCTTCCTGGACGATGACATCATTGTTCAGAAAG 1861
Query 1825 ACTTGACTCCACTCTGGGAAGTTAACCTGAACGGCAAAGTCAACGGTGCAGTTGAAACCT 1884
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1862 ACTTGACTCCACTCTGGGAAGTTAACCTGAACGGCAAAGTCAACGGTGCAGTCGAAACCT 1921
Query 1885 GTGGGGAAAGTTTCCACAGATTCGACAAGTATCTTAACTTTTCGAATCCTCACATTGCGA 1944
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1922 GTGGGGAAAGTTTCCACAGATTCGACAAGTATCTCAACTTTTCGAATCCTCACATTGCGA 1981
Query 1945 GGAACTTCAATCCAAATGCTTGTGGATGGGCTTATGGAATGAACATGTTCGACCTAAAGG 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 GGAACTTCAATCCAAATGCTTGTGGATGGGCTTATGGAATGAACATGTTCGACCTAAAGG 2041
Query 2005 AATGGAAGAAGAGAGACATCACTGGTATATACCATAAGTGGCAAAACATGAATGAGAACA 2064
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2042 AATGGAAGAAGAGAGACATCACTGGTATATACCACAAGTGGCAAAACATGAATGAGAACA 2101
Query 2065 GGACACTATGGAAACTAGGGACATTACCACCAGGATTAATAACATTCTACGGATTAACAC 2124
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2102 GGACACTATGGAAGCTAGGGACATTGCCACCAGGATTAATAACATTCTACGGATTAACAC 2161
Query 2125 ATCCCTTAAACAAGGCGTGGCATGTGCTTGGACTTGGATATAATCCGAGTATTGATAGGA 2184
|||||||||||||||||||||||||||| |||||||||||||| |||||||| || | ||
Sbjct 2162 ATCCCTTAAACAAGGCGTGGCATGTGCTGGGACTTGGATATAACCCGAGTATCGACAAGA 2221
Query 2185 AAGACATTGAGAATGCAGCAGTGGTTCACTATAACGGGAACATGAAACCTTGGTTGGAGT 2244
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2222 AGGACATTGAGAATGCAGCAGTGGTTCACTATAACGGGAACATGAAACCATGGTTGGAGT 2281
Query 2245 TGGCAATGTCCAAGTATCGGCCGTATTGGACCAAGTACATCAAGTTTGATCACCCATATC 2304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 TGGCAATGTCCAAATATCGGCCGTATTGGACCAAGTACATCAAGTTTGATCACCCATATC 2341
Query 2305 TACGTCGATGCAACCTTCATGAATAAA-TCAAATCTTTGTTAGATGATTTGAGGTAATTA 2363
| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2342 TTCGTCGTTGCAACCTTCATGAATAAAATCAAATCTTTGTTAGATGATTTGAGGTAATTA 2401
Query 2364 CTTCTAATGCTCTGTTGTTCCCATCTC-ATTCCTCTTTATTCCACAGATTGTTAATTGTT 2422
||||||||| |||||||||||||| || ||| |||||||||||||| |||||||||||||
Sbjct 2402 CTTCTAATGTTCTGTTGTTCCCAT-TCCATTGCTCTTTATTCCACACATTGTTAATTGTT 2460
Query 2423 TATTCATATC-TTTGTTTAGTCAttcttttctctttcttcttcttcttcttctttcGGGC 2481
|||||||||| ||| ||||||||||||||||| | || ||||||||| | | |||
Sbjct 2461 TATTCATATCGTTT-TTTAGTCATTCTTTTCT-T--CT-CTTCTTCTT-T-C----GGGT 2509
Query 2482 TAAAAACACTTGTGTTATTTTTTGAGTTT 2510
||||||||||| |||||||||||||||||
Sbjct 2510 TAAAAACACTTATGTTATTTTTTGAGTTT 2538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124564519469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5