BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486585
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61140.1 | Symbols: FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31... 2627 0.0
> AT3G61140.1 | Symbols: FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31,
SK31 | 26S proteasome, regulatory subunit Rpn7;Proteasome
component (PCI) domain | chr3:22626262-22630117 FORWARD LENGTH=1857
Length=1857
Score = 2627 bits (1422), Expect = 0.0
Identities = 1627/1721 (95%), Gaps = 34/1721 (2%)
Strand=Plus/Plus
Query 1 ACGAAACGAAGAACAAACACTGAAACAAAAATCTTAGCAGAGAACAAAAATCCCAAAGCC 60
|||||||||||||||||||||||||| || | |||| ||||||||||||| |
Sbjct 1 ACGAAACGAAGAACAAACACTGAAAC---AA----A--AGAG---AAAAATCCCAAAG-C 47
Query 61 TAAAAACCCTAATCCCAGACGAATCAATGGAGCGAGACGATGAAGCGAGTGGACCGATGA 120
|| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 48 TAGAAACCCTAATCCCAAACGAATCAATGGAGCGAGACGAAGAAGCGAGTGGACCGATGA 107
Query 121 TGGAGATGTGCACTAACGGCGGCGAAGAGACGTCTAATCGAAGACCTATCATAAGTGGCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 TGGAGATGTGCACTAACGGCGGCGAAGAGACGTCTAATCGAAGACCTATCATAAGTGGCG 167
Query 181 AACCGCTCGACATCGAGGCTTACGCGGCTCTCTACAAAGGTCGCACGAAGATCATGCGGC 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AACCGCTCGACATCGAGGCCTACGCGGCTCTCTACAAAGGTCGCACGAAGATCATGCGGC 227
Query 241 TTCTCTTCATCGCTAACCACTGCGGAGGAAACCACGCGGTTCAGCTTGAAGCGTTGAGGA 300
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 228 TTCTCTTCATCGCTAACCACTGCGGAGGAAACCACGCGCTTCAGTTTGACGCGTTGAGGA 287
Query 301 TGGCTTACGATGAGATCAAAAAGGGTGAGAATACGCAGTTGTTTAGAGATGTGGTCAATA 360
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 288 TGGCTTACGATGAGATCAAAAAGGGTGAGAATACGCAGTTGTTCAGAGAAGTGGTCAATA 347
Query 361 AGATTGGCGGCAGGCTTGGGGATAAGTATGGGATGGATTC-TGCTTGGTGTGAAGCCGTC 419
|||||||| |||||||||||| |||||||||||||| || |||||||||||| ||||||
Sbjct 348 AGATTGGCAACAGGCTTGGGGAAAAGTATGGGATGGA-TCTTGCTTGGTGTGAGGCCGTC 406
Query 420 GATCGTCGTGCTGAACAGAAGAAAGGAAAGCTGGAGAATGAGCTCAGTTCTTATCGGACA 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 407 GATCGTCGTGCTGAACAGAAGAAAGTAAAGCTGGAGAATGAGCTCAGTTCTTATCGGACA 466
Query 480 AATCTGATCAAGGAAAGCATCAGAATGGGTTACAATGACTTTGGAGATTTCTACTATGCG 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 467 AATTTGATCAAGGAAAGCATCAGAATGGGTTACAATGACTTTGGAGATTTCTATTACGCA 526
Query 540 TGTGGTATGCTCGGAGATGCTTTCAAGAACTATATCCGAACTCGCGACTACTGCACTACG 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 527 TGTGGTATGCTCGGAGATGCTTTCAAGAACTATATCCGAACACGCGACTACTGCACTACG 586
Query 600 ACGAAGCATATCATTCACATGTGTATGAATGCGATTCTTGTCAGCATTGAAATGGGTCAG 659
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 587 ACAAAGCACATCATTCACATGTGTATGAATGCGATTCTTGTCAGCATCGAAATGGGTCAG 646
Query 660 TTTACTCATGTTACAAGCTACGTGAACAAGGCAGAGCAAAATCCTG-ATCCTCTTGACCC 718
|||||||||||||||||||| ||||||||||||||||| ||||||| | || ||||| ||
Sbjct 647 TTTACTCATGTTACAAGCTATGTGAACAAGGCAGAGCAGAATCCTGAAACC-CTTGAACC 705
Query 719 TATTGTTATTGCAAAATTGCGATGTGCATCTGGATTGGCTCATTTGGAGCTGAAGAAGTA 778
||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 706 TATGGTTAATGCAAAACTGCGATGTGCATCTGGATTGGCTCATTTGGAGTTGAAGAAGTA 765
Query 779 CAAGCTAGCTGCTCGTAAGTTCCTT-GATGTTAATCCAGAACTTGGAAATTCCTATAATG 837
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 766 CAAGCTAGCTGCTCGTAAGTT-CTTAGATGTTAACCCAGAACTTGGAAATTCCTATAATG 824
Query 838 AGGTCATTGCTCCTCAAGATATTGCCACCTATGGTGGACTCTGTGCCCTGGCAAGCTTTG 897
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AAGTCATTGCTCCTCAAGATATTGCCACCTATGGTGGACTCTGTGCCCTGGCAAGCTTTG 884
Query 898 ATCGATCAGAATTGAAGGC----ATTCATTGACAATATCAACTTCCGGAATTTCTTGGAG 953
|||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 885 ATCGATCAGAATTGAA-GCAAAAAGTCATTGACAATATCAACTTCCGGAATTTCTTGGAG 943
Query 954 CTAGTGCCTGAAGTGAGGGAACTTATCAACGATTTCTATTCAAGCCGTTATGCTTCCTGC 1013
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 944 CTAGTGCCTGATGTGAGGGAACTTATCAACGATTTCTATTCAAGCCGCTATGCTTCCTGC 1003
Query 1014 CTGGAATATCTAGCAAGTCTCAAAGCGAATTTGCTGCTGGACATCCATCTTCATGATCAC 1073
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1004 CTGGAATATCTTGCAAGTCTCAAATCGAATCTGCTGCTGGACATCCATCTTCATGATCAC 1063
Query 1074 GTTGACACACTCTATGATCAGATAAGGAAGAAGGCAGTGATCCAGTACACACTGCCATTT 1133
||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1064 GTTGACACACTATATGATCAGATAAGGAAGAAGGCACTGATCCAGTACACATTGCCATTT 1123
Query 1134 GTGTCTGTTGATTTGAGCAGGATGGCTGATGCATTCAAGACTAGCGTCTCTGGTCTAGAG 1193
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1124 GTCTCTGTTGATTTGAGCAGGATGGCCGATGCATTCAAGACTAGCGTCTCTGGTCTAGAG 1183
Query 1194 AAAGAACTTGAAGCCTTGATCACAGACAACCAGATTCAGGCGCGGATTGATTCACACAAC 1253
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1184 AAAGAACTTGAAGCCTTGATCACAGACAACCAGATTCAGGCAAGGATTGATTCACACAAC 1243
Query 1254 AAAATCCTCTACGCAAGACACGCGGATCAGAGGAATGCAACTTTCCAAAAGGTACTTCAG 1313
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 AAAATCCTCTATGCAAGACACGCGGATCAGAGGAATGCAACTTTCCAAAAGGTACTTCAG 1303
Query 1314 ATGGGAAACGAATTCGATAGAGATGTCAGGGCGATGCTGTTAAGAGCCAACCTCCTGAAA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 ATGGGAAACGAATTCGATAGAGATGTCAGGGCGATGCTGTTAAGAGCCAACCTCCTGAAA 1363
Query 1374 CATGAGTATCATGCCAGATCGTCAAGAAAACTTTGAAATTGATGACATCAACTTTTGCTA 1433
||||||||||||||||||||| |||| ||||||||| | || |||| |||| ||||
Sbjct 1364 CATGAGTATCATGCCAGATCGGCAAGGAAACTTTGA--T-GA---CATCTGCTTT-GCTA 1416
Query 1434 AACTGAGAGGTAATTTTCAAGGGTGTTTTTTCAAGATTCGAACAAAACGAGAAATTGGGC 1493
|||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1417 AACTGAGAGG-AATATTCAAGGGTGTTTTTTCAAGATTCGAACCAAACGAGAAATTGGGC 1475
Query 1494 AAGATTACTTTTTTGTAAGAACCAATAGTGTTTCTATGAGTCGGTGACATTTTGAGTAAG 1553
||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||
Sbjct 1476 AAGATTACTTTTTTGTAAGAACCAA--GTGTTTCAATGAGTCGATGACATTTAGAGTAAG 1533
Query 1554 TAAAGGTTTTATTCAAAGATGGACAGTCCATTATTAATCAACTTTTGAACGATATTGCCT 1613
|||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1534 TAAAGGTTTTATTCTAAGATGGACAGTCCATTATTAATCAACTATTGAATGATATTGCCT 1593
Query 1614 TTTAAATGAGTCTTAGGTAGCATCGCAATAACTCCATGCTTACTTAAAACTCACAAACCA 1673
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1594 TTTAAATGAGTCTTAGGTAGCATCGCAATAACTCCATGTTTACTCAAAACTCACAAACCA 1653
Query 1674 TGAAGTTAAGAATCCGCCAAATTTGGAAGATGGGCCAACTC 1714
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 TGAAGTTAAGAATCCGCCAAATTTGGAAGATGGGCCAACTC 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86294736855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5