BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486587
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61160.2 | Symbols: | Protein kinase superfamily protein | ... 2824 0.0
AT3G61170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 207 2e-52
> AT3G61160.2 | Symbols: | Protein kinase superfamily protein
| chr3:22635939-22638817 FORWARD LENGTH=1811
Length=1811
Score = 2824 bits (1529), Expect = 0.0
Identities = 1734/1827 (95%), Gaps = 38/1827 (2%)
Strand=Plus/Plus
Query 46 gatatttctataaatatgttttcgtatatataCA-A-AGAGTTTAGATTAAGGAAGAAAA 103
|||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||
Sbjct 1 GATATTTCTATAAATATGTTTTTGTATATATACACAGAGAGTTTTGATTAAGGAAGAAAA 60
Query 104 ATCCTTAGATC-TTTATTTTCTTGTTGTCTTTGTTTCG-TTTTCTGGCAGAAGAGGGAAG 161
||||||||||| ||| |||| ||||| ||||||||||| |||||||| ||||||| ||||
Sbjct 61 ATCCTTAGATCATTT-TTTTTTTGTTATCTTTGTTTCGTTTTTCTGGTAGAAGAGAGAAG 119
Query 162 AAGGAGAGA-GAAATTGGCAGCAAAGCGATtctctctctctttctctctttctcttctcG 220
||||||||| | |||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 120 AAGGAGAGACG-AATTGGCAGCTAAGCGA-T-TCTCTCTCTTTCTCTCTTTCTCTTCTC- 175
Query 221 TGAAAGCTGTTATCTTTTGGTTTTCTTGAAACCCGtttttttttttttAGTTAATTCCTC 280
| ||| |||||||||| ||||||||| || |||||||||| |||||||||||
Sbjct 176 -----G-TGTAATCTTTTGGTGTTCTTGAAA-CC--ACTTTTTTTTTT-GTTAATTCCTC 225
Query 281 TGTTTTCTTGGAA-AGTTTTCTGC---TTT--Gaa-aaaaaaaCGATGAATGTGGTGCGG 333
||||| ||||||| ||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 226 TGTTTCCTTGGAATTGTTTTCTGCTTTTTTAAGAAGAAAAAAACGATGAATGTGGTGCGG 285
Query 334 AGATTAACGAGTATCGCCTCTGGACGCAATTTCGTTTCTTCTGATAACGTAGGAGAAACT 393
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 286 AGATTAACGAGTATTGCCTCTGGACGTAATTTCGTTTCTTCTGATAACGTAGGAGAAACT 345
Query 394 GAGAAGCCGAGATCAAAGCCTAATCAGAATCGTGAAGAAACAGAGTCTACGGAAACTACG 453
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 346 GAGACGCCGAGATCAAAGCCTAACCAGAATCGTGAAGAAACAGAGTCTACGGAAACTACG 405
Query 454 TCGTACGAGAAAGATTCTGTCTCTACCTCAGAGAACTCTGATCATTTACC---------C 504
|||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 406 TCGTACGAGAAAGATTCTGTCTCTTCCTCAGAGAACTCTGATCATTTACCAAAGGAAATC 465
Query 505 CGTGAGATGGGAAC-TGGAGATGATAAGGATATGGATTGTGGAATCATCAAGGGAAATGG 563
|||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 466 CGTGAGGTGGG-ACTTGGAGATGACAAGGATATGGACTGTGGAATCATCAAGGGAAATGG 524
Query 564 AACAGAATCTGGACGGATTATTACCACCAAGAAGAAGGGTTTGAATGATCAAAAAGACAA 623
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 525 AACAGAATCTGGACGGATTATTACCACCAAAAAGAAGGGTTTGAATGATCAAAAAGACAA 584
Query 624 GACAATCTCGTACAGAGCTGAACATGTAATTGGCACTGGCTCATTCGGTGTTGTCTTTCA 683
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GACAATCTCTTACAGAGCTGAACATGTAATTGGCACTGGCTCATTCGGTGTTGTCTTTCA 644
Query 684 GGCTAAGTGCTTAGAGACAGAAGAAAAAGTAGCAATCAAGAAAGTGTTACAGGACAAGAG 743
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 645 GGCTAAGTGCTTAGAGACGGAAGAAAAAGTAGCAATAAAGAAAGTGTTACAGGACAAGAG 704
Query 744 ATACAAAAACAGAGAACTTCAGATCATGCGAATGCTTGATCATCCTAATGTCGTTGAGCT 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ATACAAAAACAGAGAACTTCAGATCATGCGAATGCTTGATCATCCTAATGTCGTTGAGCT 764
Query 804 CAAGCATTCTTTCTTTTCCACGACTGAGAAAGACGAGCTTTATCTTAACCTTGTTCTCGA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 765 CAAGCATTCTTTCTTTTCCACGACTGAGAAAGACGAGCTTTATCTTAACCTTGTTCTTGA 824
Query 864 GTATGTTCCCGAGACTATTTACCGCGCTTCCAGATCTTACACCAAGATGAATCATCATAT 923
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 825 GTATGTACCCGAGACTATTTACCGCGCTTCCAGATCTTACACCAAGATGAATCAGCATAT 884
Query 924 GCCTATGATTTATATTCAGCTCTATACCTATCAGATTTGCCGTGCTATGAATTATCTGCA 983
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 885 GCCTTTGATTTATATTCAGCTCTACACCTATCAGATTTGCCGTGCTATGAATTATCTGCA 944
Query 984 TCAAGTGGTTGGAGTGTGTCACCGTGACATTAAGCCGCAGAATCTATTGGTCAATAATGT 1043
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 945 TCAAGTGGTTGGAGTGTGTCACCGTGACATTAAGCCGCAGAATCTGTTGGTCAATAATGT 1004
Query 1044 TACGCATGAGGTAAAGATATGCGATTTCGGGAGCGCGAAAATGCTGATTCCAGGAGAACC 1103
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1005 TACGCATGAAGTAAAGATATGCGATTTTGGGAGCGCCAAAATGCTGATTCCAGGAGAACC 1064
Query 1104 AAATATATCTTACATATGCTCAAGGTATTACAGAGCTCCTGAACTCATATTTGGAGCAAC 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 AAATATATCTTACATATGCTCAAGGTATTACAGAGCTCCTGAACTCATATTTGGAGCAAC 1124
Query 1164 CGAGTACACAAGCGCGATCGATATGTGGTCTGTCGGTTGTGTCATGGCTGAGCTTTTTCT 1223
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1125 CGAATACACAAGTGCGATCGATATGTGGTCTGTAGGTTGTGTCATGGCTGAGCTTTTTCT 1184
Query 1224 TGGACATCCTCTATTCCCTGGAGAAACAAGTGTTGATCAACTGGTGGAGATCATTAAGAT 1283
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1185 TGGACATCCTCTATTCCCTGGAGAAACCAGTGTTGATCAATTGGTGGAGATCATTAAGAT 1244
Query 1284 TTTAGGGACACCAGCAAGAGAAGAGATAAAGAACATGAATCCTCGTTACAATGATTTTAA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TTTAGGGACACCAGCAAGAGAAGAGATAAAGAACATGAATCCTCGTTACAATGATTTTAA 1304
Query 1344 GTTCCCTCAGATAAAAGCTCAACCATGGCACAAGATTTTCCGGAGACAGGTATCTCCAGA 1403
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1305 GTTCCCTCAGATCAAAGCTCAGCCGTGGCACAAGATTTTCCGGAGACAGGTATCTCCAGA 1364
Query 1404 AGCAATGGATCTTGCCTCTAGATTGCTCCAGTATTCACCAAACCTGAGATGCACAGCGCT 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AGCAATGGATCTTGCCTCTAGATTGCTCCAGTATTCACCAAACCTGAGATGCACAGCGCT 1424
Query 1464 TGAAGCATGTGCACACCCATTCTTCGATGATCTGAGAGACCCGAGAGCATCCTTGCCTAA 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TGAAGCATGTGCACACCCATTCTTCGATGATCTGAGAGACCCGAGAGCATCCTTGCCTAA 1484
Query 1524 TGGAAGAGCACTTCCTCCATTGTTTGATTTCACAGCTCAAGAACTCGCTGGTGCATCTGT 1583
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1485 TGGAAGAGCACTTCCTCCATTGTTTGATTTCACAGCTCAAGAACTTGCTGGGGCATCTGT 1544
Query 1584 TGAACTGCGTCATCGCTTAATACCCGAGCATGCAAGGAAATGACCATTTGGGTTAATGGC 1643
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1545 TGAACTGCGTCATCGCTTAATACCTGAGCATGCAAGGAAATGACCATTTGGGTTAATGGC 1604
Query 1644 TGCTTCTCTACGCAGATGTTGATATATAAAGCTTTTTTGATTTTGAGAGTTTCTTGTTGA 1703
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
Sbjct 1605 TGCTTCTCTACGCAGATGTTGATATATAAATCTTTTTTTATTTTGAGAGTTTCTTGTTCA 1664
Query 1704 CACGTATAGCATTGTTCTGGTTATGAACCCTCACTGACCTCTGCAACCACATGGCCTAGC 1763
|| |||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1665 CAAGTATAGCATTGTGCTGGTTATGAACCCTCACTGACCTCTGCAACCACATCGACTAGC 1724
Query 1764 AGTTTGAAAGTGTATAATTGTAAGTTTGTAACTTTGTAGCTTCCACTGTTGCAGACAGAA 1823
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1725 AGTTTGAAAGTGTATAATTGTAAGTTTGTAACTTTGTAGCTTTCATTGTTGCAGACAGAA 1784
Query 1824 ATGCAGAATTTTCCGAGTTTTTCTTCT 1850
||||||||||||||||||||| |||||
Sbjct 1785 ATGCAGAATTTTCCGAGTTTTCCTTCT 1811
> AT3G61170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22638691-22641237 REVERSE LENGTH=2352
Length=2352
Score = 207 bits (112), Expect = 2e-52
Identities = 122/127 (96%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 1724 TTATGAACCCTCACTGACCTCTGCAACCACATGGCCTAGCAGTTTGAAAGTGTATAATTG 1783
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2352 TTATGAACCCTCACTGACCTCTGCAACCACATCGACTAGCAGTTTGAAAGTGTATAATTG 2293
Query 1784 TAAGTTTGTAACTTTGTAGCTTCCACTGTTGCAGACAGAAATGCAGAATTTTCCGAGTTT 1843
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2292 TAAGTTTGTAACTTTGTAGCTTTCATTGTTGCAGACAGAAATGCAGAATTTTCCGAGTTT 2233
Query 1844 TTCTTCT 1850
| |||||
Sbjct 2232 TCCTTCT 2226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91565794080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5