BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486589
Length=2304
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1927 0.0
AT3G61160.2 | Symbols: | Protein kinase superfamily protein | ... 207 3e-52
> AT3G61170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22638691-22641237 REVERSE LENGTH=2352
Length=2352
Score = 1927 bits (1043), Expect = 0.0
Identities = 1166/1223 (95%), Gaps = 17/1223 (1%)
Strand=Plus/Plus
Query 1098 AGGGATCATGGAGTCAGCGTTGAAAGTGTTTGAAGGGATGATTGAGAAAGATGTGATATC 1157
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGGGATCATGGATTCAGCGTTGAAAGTGTTTGAAGGGATGATTGAGAAAGATGTGATATC 1190
Query 1158 TTGGACAGCTCTTGTCACAGGAAATACACATAACGGATTTTATGAAGAAGCACTAAAGTT 1217
||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 1191 TTGGACAGCTCTTGTGACAGGAAATACACATAACGGATCTTATGATGAAGCACTGAAGTT 1250
Query 1218 GTTCTGTAACATGAGAGTTGGAGGCATTTA-TCCTGATCAGATTGTAACAGCGAGTGTAC 1276
|||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||
Sbjct 1251 GTTCTGTAACATGAGAGTTGGAGGCA-TTACTCCTGATAAGATTGTTACAGCGAGTGTAT 1309
Query 1277 TAAGCGCCTCAGCCGAGTTAACTCTTTTGGAGTTTGGGCAACAGGTACATGGGAATTATA 1336
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TAAGCGCCTCGGCGGAGTTAACTCTTTTGGAGTTTGGGCAACAGGTACATGGGAATTATA 1369
Query 1337 TTAAATCTGGTTTTCCTTCATCTTTGTCAGTAAACAACTCTCTTGTGACAATGTACACAA 1396
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1370 TTAAATCTGGTTTTCCTTCATCTTTGTCAGTAAACAATTCTCTTGTGACAATGTACACAA 1429
Query 1397 AATGTGGAAGCTTAGAAGACGCGAATGTTATATTCAACTCTATGGAAATCAGGGATTTAA 1456
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 AGTGTGGAAGCTTAGAAGACGCGAATGTTATATTCAACTCTATGGAAATCAGGGATTTAA 1489
Query 1457 TAACATGGACTTGTATTA-T-T--G-T--G--------GGTCTCATAGAAGAAGCTCAAC 1501
|||||||||||||| ||| | | | | | |||||| ||||||| |||||||
Sbjct 1490 TAACATGGACTTGTCTTATTGTGGGTTACGCAAAAAACGGTCTCTTAGAAGATGCTCAAC 1549
Query 1502 GATACTTTGATTCGATGAGAACAGTTTACGGAATCACACCAGGACCTGAACACTATGCCT 1561
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1550 GCTACTTTGATTCGATGAGAACAGTTTATGGAATCACACCAGGACCGGAACACTATGCCT 1609
Query 1562 GTATGATTGATCTCTTTGGTAGATCTGGTGATTTCGTAAAAGCAGAGGAATTGCTGCATC 1621
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1610 GTATGATTGATCTCTTTGGTAGATCTGGTGATTTCGTAAAAGTAGAGCAATTGCTGCATC 1669
Query 1622 AAATGGAGGTTGAACCAGATGCAACTGTATGGAAAGCGATTTTGGCTGCAAGTAGGAAGC 1681
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1670 AAATGGAGGTTGAACCAGATGCTACTGTATGGAAAGCGATTTTGGCTGCAAGTAGGAAGC 1729
Query 1682 ATGGGAATATAGAAAACGGGGAAAGAGCAGCGAAAACTCTCATGAAATTGGAACCAAACA 1741
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1730 ATGGGAATATAGAAAACGGGGAAAGAGCAGCGAAAACTCTTATGGAATTGGAACCAAACA 1789
Query 1742 ATGCTGTTCCTTATGTTCTGTTATCAAACATGTATTCTGCAGCGGGAAGACAAGACGAAG 1801
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 ATGCTGTTCCTTATGTTCAGTTATCAAACATGTATTCTGCAGCGGGAAGACAAGACGAAG 1849
Query 1802 CTGCAAATGTTCGTAGATTGATGAAATCTCGTAATATAAGCAAAGAGCCTGGTTGCAGTT 1861
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1850 CTGCAAATGTTCGTAGATTGATGAAATCTCGTAATATAAGCAAAGAACCTGGTTGCAGTT 1909
Query 1862 GGGTTGAAGAGAAAGGTAAAGTTCATAGCTTTATGTCTGAAGATAGAAGACACCCGAGAA 1921
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1910 GGGTTGAAGAGAAAGGTAAAGTTCATAGCTTTATGTCTGAAGATAGAAGACATCCGAGAA 1969
Query 1922 TGGTTGAGATATATTCCAAGGTTGATGAAATGATGCTTTTGATTAAAGAGGCTGGTTATT 1981
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1970 TGGTTGAGATATATTCCAAGGTTGATGAAATGATGCTTTTGATCAAAGAGGCTGGTTATT 2029
Query 1982 TAGCGGATATGAGTTTTGCCCTCCATGACTTGGATAAGGAAGGCAAGGAGCTAGGTTTGG 2041
| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2030 TCGCGGATATGAGTTTTGCTCTCCATGACTTAGATAAGGAAGGGAAGGAGCTAGGTTTGG 2089
Query 2042 CTTACCATAGTGAGAAATTAGCTGTAGCGTTTGGTCTACTTGTTGTACCATCTGGAGCTC 2101
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2090 CTTACCATAGTGAGAAATTAGCTGTTGCGTTTGGTCTACTTGTTGTACCATCTGGAGCTC 2149
Query 2102 CAATCCGGATAATCAAGAACCTCCGCGTCTGTGGGGATTGCCACAGTGCAATGAAACTAT 2161
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2150 CAATCCGGATCATCAAGAACCTTCGCGTCTGTGGGGATTGCCACAGTGCAATGAAACTAT 2209
Query 2162 TGGTAACATTTGCATTAGAAGAAAAAATCGGAAAATTCTGCATTTCTGTCTGCAACAGTG 2221
|||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 2210 TGGTAACATTTGCAATAGAAGGAAAACTCGGAAAATTCTGCATTTCTGTCTGCAACAATG 2269
Query 2222 GAAGCTACAAAGTTACAAACTTACAATTATACACTTTCAAACTGCTAGTCCATGTGGTTG 2281
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2270 AAAGCTACAAAGTTACAAACTTACAATTATACACTTTCAAACTGCTAGTCGATGTGGTTG 2329
Query 2282 CAGAGGTCAGTGAGGGTTCATAA 2304
|||||||||||||||||||||||
Sbjct 2330 CAGAGGTCAGTGAGGGTTCATAA 2352
Score = 1797 bits (973), Expect = 0.0
Identities = 1058/1099 (96%), Gaps = 6/1099 (1%)
Strand=Plus/Plus
Query 1 ATGTACAGATTGAAGTACAGAAAGTGGCGTCTTCCTTTGAAACCGCTTGGTCATTGTTGT 60
||| |||||||||| |||||||| ||||| ||||||||||||||| ||||| | |||||
Sbjct 1 ATGCACAGATTGAACTACAGAAAATGGCGCCTTCCTTTGAAACCGTTTGGT-A--GTTGT 57
Query 61 ATTCACAGCCATGCTGATCGAACAAAGCTTCACTCGAATCTG-TTGTTGGGAGATTTGTC 119
||||||||| |||||||| |||| |||||||||||||||||| || ||||||||||||||
Sbjct 58 ATTCACAGCTATGCTGATAGAACGAAGCTTCACTCGAATCTGCTT-TTGGGAGATTTGTC 116
Query 120 TAAATCTGGTCGGGTCGATGAAGCCCGCCAAATGTTCGATAAAATGCCTGAGAGGGATGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TAAATCTGGTCGGGTCGATGAAGCCCGCCAAATGTTCGATAAAATGCCTGAGAGGGATGA 176
Query 180 GTTTACCTGGAACACTATGATCGTTGCTTACTCGAATTCAAGGCGACTTGCTGATGCTGA 239
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 177 GTTTACATGGAACACGATGATCGTTGCTTACTCGAATTCAAGGCGACTTTCTGATGCAGA 236
Query 240 ACAGCTTTTTCGTAGCAACCCAGTGAAGAATACAATCTCCTGGAATGCTCTTATTTCTGG 299
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 AAAGCTTTTTCGTAGCAACCCAGTGAAGAATACAATCTCCTGGAATGCTCTTATCTCTGG 296
Query 300 GTATTGCAAGTCTGGAAGTAAAGTTGAAGCTTTTAATCTGTTTTGGGAAATGCAGTCTGA 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 297 GTATTGCAAGTCTGGAAGTAAAGTTGAAGCTTTTAATTTGTTTTGGGAAATGCAGTCTGA 356
Query 360 TGGAATCAAACCTAACGAGTACACTTTGGGTAGTGTTCTTAGGATGTGTACTTCGCTTCT 419
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 357 TGGAATAAAACCTAACGAGTACACTTTGGGTAGTGTTCTTAGGATGTGTACTTCGCTTGT 416
Query 420 TTTGCTTCTGAGAGGTGAACAGATTCATGGGCATACAATAAAAACCGGGTTTGATTTGGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTTGCTTCTGAGAGGTGAACAGATTCATGGGCATACAATAAAAACCGGGTTTGATTTGGA 476
Query 480 TGTCAATGTCGTTAATGGCCTTCTTGCTATGTATGCACAATGCAAACGTATCTCTGAAGC 539
||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 TGTTAATGTGGTGAATGGCCTTCTTGCTATGTATGCACAATGCAAGCGTATCTCTGAAGC 536
Query 540 TGAATACCTCTTTGATACAATGGCAGGTGAGAAAAATAATGTTACATGGACTTCAATGCT 599
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 537 TGAATACCTCTTTGAGACAATGGAAGGTGAGAAAAATAATGTTACATGGACTTCAATGCT 596
Query 600 CACTGGTTACTCTCAAAATGGTTTTGCTTTCAAGGCAATCGAGTGTTTTAGGGATTTGAG 659
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 597 CACTGGTTACTCTCAAAATGGATTTGCTTTCAAGGCAATAGAGTGTTTTAGGGATTTGAG 656
Query 660 AAGAGACGGAAATCAATCGAATCAATACACATTTCCTAGTGTTTTAACTGCTTGTGCCTC 719
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 AAGAGAAGGAAATCAATCGAATCAATATACATTTCCTAGTGTTTTAACTGCTTGTGCCTC 716
Query 720 GGTTTCTGCTTGCAGGGTAGGAGTCCAGGTACATGGCTGCATAGTTAAGAGTGGTTTCAA 779
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 GGTTTCTGCTTGCAGGGTAGGAGTCCAGGTACATTGCTGCATAGTTAAGAGTGGTTTCAA 776
Query 780 GACCAATATCTATGTTCAGAGCGCATTGATTGATATGTATGCTAAATGCAGAGACTTGGA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 777 GACCAATATCTATGTTCAGAGCGCATTGATTGATATGTATGCTAAATGCAGAGAAATGGA 836
Query 840 ATCCGCAAGAGCTTTGTTAGAAGGTATGGAGGTTGATGATGTGGTATCTTGGAACTCGAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATCCGCAAGAGCTTTGTTAGAAGGTATGGAGGTTGATGATGTGGTATCTTGGAACTCGAT 896
Query 900 GATTGTAGGGTGTGTTAGACAAGGTCTTACAGAAGAAGCTCTGTCTATGTTTGGAAGAAT 959
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 897 GATTGTAGGGTGTGTTAGACAAGGTCTTATTGGAGAAGCTCTGTCTATGTTTGGAAGAAT 956
Query 960 GCATGAGCGAGATATGAAAATAGATGATTTCACGATCCCATCCATCTTAAATTGTTTTGC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GCATGAGCGAGATATGAAAATAGATGATTTCACGATCCCATCCATCTTAAATTGTTTTGC 1016
Query 1020 TTCGTCTAGGACAGAAATGAAGATAGCTTCTTCTGCACATTGTCTGATTGTGAAA-CCGG 1078
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1017 TTTGTCTAGGACAGAAATGAAGATAGCTTCTTCTGCACATTGTCTGATTGTGAAAACCGG 1076
Query 1079 GTATGCGACTTACAAGCTT 1097
||||||||||||||| |||
Sbjct 1077 GTATGCGACTTACAAACTT 1095
> AT3G61160.2 | Symbols: | Protein kinase superfamily protein
| chr3:22635939-22638817 FORWARD LENGTH=1811
Length=1811
Score = 207 bits (112), Expect = 3e-52
Identities = 122/127 (96%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 2178 AGAAGAAAAAATCGGAAAATTCTGCATTTCTGTCTGCAACAGTGGAAGCTACAAAGTTAC 2237
||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1811 AGAAGGAAAACTCGGAAAATTCTGCATTTCTGTCTGCAACAATGAAAGCTACAAAGTTAC 1752
Query 2238 AAACTTACAATTATACACTTTCAAACTGCTAGTCCATGTGGTTGCAGAGGTCAGTGAGGG 2297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1751 AAACTTACAATTATACACTTTCAAACTGCTAGTCGATGTGGTTGCAGAGGTCAGTGAGGG 1692
Query 2298 TTCATAA 2304
|||||||
Sbjct 1691 TTCATAA 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114356841510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5