BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486590
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61172.1 | Symbols: LCR8 | low-molecular-weight cysteine-ric... 300 4e-81
> AT3G61172.1 | Symbols: LCR8 | low-molecular-weight cysteine-rich
8 | chr3:22641764-22642110 REVERSE LENGTH=225
Length=225
Score = 300 bits (162), Expect = 4e-81
Identities = 206/227 (91%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 1 ATGACTAAACTCACCATTGTTGCCATCTTTC-TTGTCTTCTTCTTAGGGATGATGGCGAA 59
|||| ||||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||||
Sbjct 1 ATGAGTAAACTCACCAATGTTGTCATC-TTCATTGTCTTCTTCCTAGGGATGATGGCGAA 59
Query 60 AGAAACACAAGGACAACATATATGTCATCAGATTCTATTAGATAACAATTGTGATGGAGC 119
|||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||
Sbjct 60 AGAAACGCAAGGACAACATATATGTCATCAGATTCTGTTAAACAACAATTGTGATGGAGC 119
Query 120 CACATGCACC-GATCTGTGTGACAAGAAGTTGCAAGGAACTGGCCAGTGTTACAGAACCG 178
||||||||| | ||| ||||||||| |||||||||||||||||||||| || | |||||
Sbjct 120 CACATGCACAAG-TCTCTGTGACAAGCAGTTGCAAGGAACTGGCCAGTGCTATAAAACCG 178
Query 179 TTGACAGAAGATTTATCTGCCTCTGCAATTATATTTGCAGAACTTGA 225
|||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 179 TTGACAAAAGATTTATTTGCCTCTGCAATTATCTTTGCAGAACTTGA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10103817549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5