BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486591
Length=228
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61177.1 | Symbols: LCR53 | low-molecular-weight cysteine-ri... 322 9e-88
AT3G61175.1 | Symbols: LCR52 | low-molecular-weight cysteine-ri... 291 2e-78
> AT3G61177.1 | Symbols: LCR53 | low-molecular-weight cysteine-rich
53 | chr3:22644470-22644791 REVERSE LENGTH=228
Length=228
Score = 322 bits (174), Expect = 9e-88
Identities = 213/231 (92%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAAATCCACCATTCTT-GCTATTTTGATGATCGTCCTCGTTCTAGGGATGGTAAC 59
|||||||||||||||| | || |||||||| ||||||||| |||||||||||||||||||
Sbjct 1 ATGGCTAAATCCACCA-TATTCGCTATTTTCATGATCGTCTTCGTTCTAGGGATGGTAAC 59
Query 60 GAAAGAGAC-ACAAGGACAAGAAATGTGTCGTGATCTTTTAATGAGAGCTCAAAACTGTG 118
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 GAAAGAGACGA-AAGGACAAGAAATGTGTCGTGATCTTTTAATGAGAGCTAAAAACTGTG 118
Query 119 ATGCTGGCACTTGTGCCACTCTGTGTAAGCAAAAATGGAAAGGAAATGGATCGTGCTTCC 178
| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACGATAGCACTTGTGCTACTCTGTGTAAGCAAAAATGGAAAGGAAATGGATCGTGCTTCC 178
Query 179 CAAACTT-TCAAATCAAAAGCTGCCTCTGCACATTTCCTTGCAAAACTTGA 228
||||| | | | | ||||||||||||||||||||||||||||||||||||
Sbjct 179 CAAACGTAT-ATAGAAAAAGCTGCCTCTGCACATTTCCTTGCAAAACTTGA 228
> AT3G61175.1 | Symbols: LCR52 | low-molecular-weight cysteine-rich
52 | chr3:22642983-22643309 REVERSE LENGTH=234
Length=234
Score = 291 bits (157), Expect = 2e-78
Identities = 210/234 (90%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 1 ATGGCTAAATCCACCATTCTTGCTATTTTGATGATCGTCCTCGTTCTAGGGATGGTAACG 60
||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 1 ATGTCTAAATCCACCATTCTCGCTATTTTCATGATCGTCCTCGTTCTAGGGAAGGTAACG 60
Query 61 AAAGAGACACAAGGACAAGAAATGTGTCGTGATCTTTTAATGAGAGCTCAA-AACTGTGA 119
|||||||| |||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 61 AAAGAGACGCAAGGACAAGAAATGTGTCGTGATATTTTAATGAAAGCT-AAGAACTGTGA 119
Query 120 TGCTGGCACTTGTGCCACTCTGTGTAAGCAAAAATGGAAAGGAAATGGATCGTGCTTCCC 179
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAAGGCACTTGTGATACTCTGTGTAAGCAAAAATGGAAAGGAAATGGATCGTGCTTCCC 179
Query 180 AAAC-TTTCA-A---ATC-AAAA-GCTGCCTCTGCACATTTCCTTGCAAAACTT 226
|||| ||| | | || |||| | || |||||||||||||||||||||||||
Sbjct 180 AAACGTTT-ATACTTATAGAAAAAGTTGTCTCTGCACATTTCCTTGCAAAACTT 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10254620796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5