BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486593
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61180.1 | Symbols: | RING/U-box superfamily protein | chr3... 2412 0.0
> AT3G61180.1 | Symbols: | RING/U-box superfamily protein | chr3:22645566-22647667
FORWARD LENGTH=1631
Length=1631
Score = 2412 bits (1306), Expect = 0.0
Identities = 1531/1637 (94%), Gaps = 26/1637 (2%)
Strand=Plus/Plus
Query 1 CTCAAAACCTAGAATCATCCA-CCCGCAAAGTCGGCAGATTTCCAGCGAATTCAAACCCG 59
||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1 CTCGAAACCTAGAATCATCCACCCCGCAAAGTCGACAGATTTCCAGCGAATTCAAACCCG 60
Query 60 ACCCATCGAGATTCTGGATCAACCCGATTACCCAAGATCCAATCTTTCTATTTGATGAAT 119
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 ATCCATCGAGATTCTGGATCAACCCGATTACCCAAGATCCAATCTTTCTAATTGATGAAT 120
Query 120 CAATCGATCCCTTTTACCGTCTCTTCTTCTCCGGGGACGGATACGATGGACGTTTCGCCG 179
||||||||||||| |||||| |||||||||||| ||| ||||||||||||| |||||||
Sbjct 121 CAATCGATCCCTTCTACCGTATCTTCTTCTCCGACGACTGATACGATGGACGCTTCGCCG 180
Query 180 CTTCTTGGCCGGAACAGACGTAACCGCCCACGGTCCTCACAGCCGCTTCGTGGCGCGGCG 239
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 181 CTTCTTGGCCGGAACAGACGTAACCGCCCACGGTCCTCTCAGCCGATTCGTGGCGCGGCG 240
Query 240 TCGAGACTTCTCCGCCGTGCTAGCAACCGCCGGATGATGCTCCGTGAGCCATCCGTTAGA 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 241 TCGAGACTTCTCCGCCGTGCTAGCAACCGCCGGATGATGCTCCGTGAGCCCTCCGTTCGA 300
Query 300 GTCCGTGAGGTGGCGGCTGAGCAGCTTGAGGAACGGCAGAGTCAATGGGCTTACTCGAAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GTCCGTGAGGTGGCGGCTGAGCAGCTTGAGGAACGGCAGAGTCAATGGGCTTACTCTAAA 360
Query 360 CCCATTATTGTTCTCGATATACTTTGGAATTTCGTCTTTGTGATTGTTTCAATCGCGATT 419
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 361 CCCATTATAGTTCTCGATATACTTTGGAATTTCCTATTTGTGATTGTTTCAATCGCGATT 420
Query 420 CTAGGGTTTAGTTCTGAAGAAGATCCTGATGTTCCTCTTAGGTTGTGGATTATTGGGTAT 479
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CTAGGGTTTAGTTCTGATGAAGATCCTGATGTTCCTCTTAGGTTGTGGATCATTGGGTAT 480
Query 480 AATTTTCAGTGTTTGCTTCATGTTGGTTGTGTAATTGCTGAGTATAAACGTCGCCGTGAA 539
||| ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 481 AATGTTCAGTGTTTGTTTCATGTTGGATGTGTCATTGCTGAGTATAAACGTCGCCGTGTT 540
Query 540 GCTAATTCTCCTCCT---AGTGGTGAAGATTCCTCCAATCACGAATCTCTTAGCGGAAGT 596
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GCTAATTCTCCTCCTCCTAGTGGTGAAGATTCCTCCAATCACGAGTCTCTTAGCGGAAGT 600
Query 597 GAAGACGAATCTGATGGCTATAGCATTAACGACGCTGATGATGA---CCATGGAACTAGT 653
||||| |||||||||||||||||||||||| || |||||||||| |||||||||||||
Sbjct 601 GAAGATGAATCTGATGGCTATAGCATTAACAACACTGATGATGATGACCATGGAACTAGT 660
Query 654 TTCACCAAGCACCTTGAATCTGCGAATACTATGTTCTCTTTTGTCTGGTGGATCATCGGG 713
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 661 TTCACTAAGCACCTTGAATCTGCGAATACCATGTTCTCTTTTGTGTGGTGGATCATCGGG 720
Query 714 TTTTACTGGGTCACGGCTGATACCGAGGCACTAGCTCAGTCTTCGCCTCAACTCTACTGG 773
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 721 TTTTACTGGGTGACGGCTGATACCGAGGCACTAGCTCAATCTTCGCCACAACTCTACTGG 780
Query 774 CTCTGTGTTGCATTCCTTGCGTTTGATGTTATGTTTGTTGTCATTTGCGTTGCGGTTGCT 833
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 CTCTGTGTTGCATTCCTTGCGTTTGATGTTATGTTTGTTGTCATTTGCGTAGCGGTTGCT 840
Query 834 AGTCTGATTGGTATTGCTGTTTGCTGCTGTTTACCTTGCATCATCGCAATCTTGTACGCA 893
||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 841 AGTCTTATTGGTATTGCTGTTTGTTGCTGTTTACCTTGCATCATTGCGATCTTGTACGCA 900
Query 894 TTAGCAGATCAGGAAGGTGCACCCGATGAAGAGATAGAAAGGCTTTTAAAATTCAAGTTC 953
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 901 TTAGCAGATCAGGAAGGTGCACCGGATGAAGAGATAGAGAGGCTTTTAAAATTCAAGTTT 960
Query 954 CTCGTAGTAAAGAATTCCGAGAAAGTGAATGGCGAAATCCGGGAAACTCAAGGAGGGATA 1013
||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 CTCACAGTAAAGAATTCTGAGAAAGTGAATGGCGAAATACGGGAAACTCAAGGAGGGATA 1020
Query 1014 ATGGCTGGATTAGGTACCGAGTCTCAAACCGAACGTGTGTTATCAAGCGAAGATGCTGAA 1073
||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1021 ATGACTGGATTAGATACCGAGTCTCAAACCGAACGTATGTTATTAAGCGAAGATGCTGAA 1080
Query 1074 TGCAGCATTTGTCTATGTGCTTATGAAGATGGAGTAGAACTAAGAGAGCTTCCTTGTAGA 1133
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1081 TGCAGCATTTGTCTATGTGCTTATGAAGATGGAGTAGAACTAAGGGAGCTTCCTTGTAGA 1140
Query 1134 CATCATTTTCACAGTTTATGTGTAGACAAATGGCTAAGGATCAACGCAACTTGTCCTCTC 1193
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1141 CACCATTTTCACAGTTTATGTGTAGACAAATGGCTAAGGATCAACGCTACTTGCCCTCTC 1200
Query 1194 TGCAAATTCAATATCCTCAAAAATGGTGAACCTAGTGGCAGTGAACAAGTGTGAGGAGGA 1253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1201 TGCAAATTCAATATCCTCAAAAATGGTGAACCTAGTGGCAGTGAACAAGTGTGATGAGGA 1260
Query 1254 GAAAGATTTTGCTGTTCAATCTTTGTGGAATGT--T-ACCTTAAAAGTTACC-TTAACAT 1309
||||||||||||||||||||||||||||||||| | | || | | | | | || || |
Sbjct 1261 GAAAGATTTTGCTGTTCAATCTTTGTGGAATGTGATGAGCTCATCA-TCATCATTTACTT 1319
Query 1310 CAACATCATTACCTTTATTCTTT-GACCATTACAGAGGAAAGAACAAGAA-GAAGACCGT 1367
||| | | | ||| |||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 1320 CAA-AGCCTG---TTTGTTCTTTTGACCATTACAGAGGAAAGAACAAGAAAGAAGACCTT 1375
Query 1368 GAGATTTGTTTTGAGATGAAGCTGCACATCTTGTCTTTTTGGATATGATATTGGTAAATG 1427
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1376 GAGATTTGTTTTGAGATGAAGCTGCACATCTTGTCTTTTTGGATATGATATTTGTAAATG 1435
Query 1428 CAATAAGTATATATAGTTCGGTTGGAAAATGTAATTCATCGAGTCAGGTGTGATTTTAGC 1487
||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1436 CAATAAGTATATATAGTTCGGTTGGAAGATGTTATTCATCGAGTCAGTTGTGATTTTAGC 1495
Query 1488 CGTTTGG-GTTTTTTAAGCAACCGATAAATTAGATTAATTTACGGTGATGATCCATG--T 1544
||||||| |||||| ||||||| ||| |||||||||||| ||||||||||| ||||| |
Sbjct 1496 CGTTTGGTGTTTTT-AAGCAACGGATTAATTAGATTAATGTACGGTGATGAACCATGCAT 1554
Query 1545 -TT-ATATTGCTGTGACTTCATTGTAGTGAGGTGAAAAAGAGAAAGAG-G-TCACTATTT 1600
|| ||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||
Sbjct 1555 GTTTATATTGCTGTGACGTCATTGTAGTGAGGTGAAAAAGAGAGAGAGAGATCACTATTT 1614
Query 1601 AATCAGAATTCACATTC 1617
|||||||||||||||||
Sbjct 1615 AATCAGAATTCACATTC 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5