BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486595
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61190.1 | Symbols: BAP1 | BON association protein 1 | chr3:... 780 0.0
> AT3G61190.1 | Symbols: BAP1 | BON association protein 1 | chr3:22650527-22651449
REVERSE LENGTH=923
Length=923
Score = 780 bits (422), Expect = 0.0
Identities = 579/650 (89%), Gaps = 29/650 (4%)
Strand=Plus/Plus
Query 1 ATGACAAAAACATTGGAGATTGATTTGAGATCAGCAGAAGGGCTTAAGCTTAACCGGAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 80 ATGACAAAAACATTGGAGATTGATTTGAGATCAGCAGAAGGGCTTAAGCTAAACCGGAGA 139
Query 61 CCCATCAAGAAAAAGACTCTCTG-CGTCGTAACGATCGACGAGAAATCTCGAACCTCTAA 119
|||||||||||||||||| || | |||||||| ||||||||||||| ||||| |||||
Sbjct 140 CCCATCAAGAAAAAGACTTTC-GCCGTCGTAAAAATCGACGAGAAATGTCGAAAATCTAA 198
Query 120 TCTTGATGAATCAAGAAGAAGCAATCCAACATGGAACTATAAATCAGAGATACCCATCAA 179
|||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 199 TCTTGACGAATCGAGAAGAAGCAATCCTACATGGAACTATAAATCAGAGATGCCCATCAA 258
Query 180 TGGTAATGTACAGTTTATCACCATTGAGGTATTTTATCGAACAGGTTCTGGGCATCAGaa 239
|||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 259 TGGTAATGAACAGTTTATCTTCATTGAGGTATTTTATCGAACAGGTTCTGGGCATGATAA 318
Query 240 aaaaaTCGGAGAAGCTAAAATCCCAACGAAGGATTTCATGGGAAGGTATTCACCAGAAGG 299
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 319 AAAAATCGGAGAAGCTAAAATCCCAACGAATGATTTCATGGGAAGGTATTCACCTGAAGG 378
Query 300 TCATTTAAACTTCTTGAGCTATAGATTGAGAGATGAGTTTGGTGATAAGTGTGGGATCGT 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TCACTTAAACTTCTTGAGCTATAGATTGAGAGATGAGTTTGGTGATAAGTGTGGGATCGT 438
Query 360 CAATCTTTCGATTTTAGTTAAATCGTCAACGACGGCGATAAGAGATTATGGAGCATGTTC 419
||||||||||||||| ||||||||| | | | | | |||||||| || || |||||
Sbjct 439 CAATCTTTCGATTTTGGTTAAATCGG-ATC--C--C-ACCAGAGATTACGGCGCGTGTTC 492
Query 420 GTCGCAAGCGGCGGATACTGGGTTGTGGAGACCGAGATCGGAGACGCCGTCGATTGATGG 479
||| |||||||||| |||||| |||||||| ||||||| |||||| | |||||||||||
Sbjct 493 GTCCCAAGCGGCGGTTACTGGTTTGTGGAGGCCGAGATTAGAGACGGCATCGATTGATGG 552
Query 480 ATATGGTGGCCGGACTGTTACCGGAGTTCCGGTTTGGGGTGTGTATCAACGGCAATTCTA 539
||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 553 ATACGGTGGCCGGACTGTTACCGGAGTTCCGGTTTGGGGTCTGTATCAACGCCAATTTTA 612
Query 540 A---CTTCTCTTTTT--------AT--A--T-T-ATTAATTCTTCGTCTTTGTTCCATAT 582
| ||| | ||||| || | | | |||||||||||||||||||||||||
Sbjct 613 AAATCTTTTTTTTTTGGGGGGGGATGCACATATTATTAATTCTTCGTCTTTGTTCCATAG 672
Query 583 ATAGATCTTCCCAATTTGGAATTGAGGAACAAAGATGTGTGATTAATTTT 632
|| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AT---T-TTCCCAATTTGGAATTGAGGAACAAAGATGTGTGATTAATTTT 718
Score = 75.0 bits (40), Expect = 1e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 704 TTGTGCGTTATTGTAACGTTACTTGCGTGGTGATTTGTTGCGG 746
||||| |||||||||||||||||||||||||||||||||||||
Sbjct 880 TTGTGAGTTATTGTAACGTTACTTGCGTGGTGATTTGTTGCGG 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5