BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486596
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61200.1 | Symbols: | Thioesterase superfamily protein | ch... 970 0.0
> AT3G61200.1 | Symbols: | Thioesterase superfamily protein |
chr3:22657455-22658390 REVERSE LENGTH=751
Length=751
Score = 970 bits (525), Expect = 0.0
Identities = 615/659 (93%), Gaps = 4/659 (1%)
Strand=Plus/Plus
Query 1 AAAAATGAATTGGGAAAAATTCCGTGAAACTGGGTGCTCAGACGACACC-ACAATGTCGT 59
|||||||||||||| ||||||||||||||||||| || |||| |||||| || ||||| |
Sbjct 37 AAAAATGAATTGGGCAAAATTCCGTGAAACTGGGAGCCCAGAAGACACCGAC-ATGTCTT 95
Query 60 CTTCTCCGATCTCGTCAGAGACGACGGCTGTATCCAAAGAAATCGATCCAAATTACGTAT 119
|| ||||||||||||| || |||||||| || ||||||| |||||||||||||||||||
Sbjct 96 CTACTCCGATCTCGTCCGACACGACGGCGGTGTCCAAAGTGATCGATCCAAATTACGTAT 155
Query 120 TAATGGTTGCTGATTTCTTCAAAGCTATTTCCCCAGACTCCTCTTGCAACGATTTCACCT 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 156 TAATGGTTGCTGATTTCTTCAAAGCTATTTCCCCAGACGAATCTTGCAACGATTTCACCT 215
Query 180 CTTTCGACTCTTTCTCTGTCTTATTTCAAAGCAACACCAGAGCTCTCTCCATCTCACGCG 239
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct 216 CTTTCGACTCTTTCTCCGTCTTATTTCAAAACAATACCAGAGCTCTCTCCATCGCACGCG 275
Query 240 GCCGTGTCTCGTGCTCCGTCATCGTCACGCCAGGCATAGCCAAtttttttAATGGGTTAC 299
||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||
Sbjct 276 GCCGTGTCTCGTGCTCCGTCACCGTCACGCCAGGCATATCCAATTTCTTTAAGGGGTTAC 335
Query 300 ATGGAGGAGCAGTGGCATCAATTGCAGAGAGAATAGCGATGGCTTGTGTGAAAACTGTTG 359
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 336 ATGGAGGAGCGGTGGCATCAATTGCAGAGAGAGTAGCGATGGCTTGTGTGAAAACTGTTG 395
Query 360 TGTCTGAAGACAAACAGCTGTTCCTTGGTGAATTGAGTATGTCTTATCTCTCTTCTGCTC 419
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 396 TGTCTGAAGACAAACATCTGTTCATTGGTGAATTGAGTATGTCTTATCTCTCTTCTGCTC 455
Query 420 CTATTTCGAGTGAATTGGTGGTGGAGGGATCGGTGGTGAGGACTGGGAGGAATCTGTCGG 479
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 456 CTATTTCGAGTGAATTGTTGGTGGAGGGAACGGTGGTGAGGACTGGGAGGAATCTGTCGG 515
Query 480 TTGTGATTGTTGAGTTCAAGATCAAGGAGACCATGAAAGTCACTTACCTATCTCGTGCTA 539
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TGGTGACTGTTGAGTTCAAGATCAAGGAGACCATGAAAGTCACTTACCTATCTCGTGCTA 575
Query 540 CATTTTACCATTCTCTCATCTCAAAGCTTTAA-GCTTTTTGACATGCTCAGAGATCTTTT 598
| ||||||||||||| |||||| ||||||||| ||||||| |||||||||| ||||||||
Sbjct 576 CTTTTTACCATTCTCCCATCTCTAAGCTTTAAAGCTTTTTCACATGCTCAGTGATCTTTT 635
Query 599 GTTGATTCTTTTTACATTCTTCTATTCAATAAAACAAGATTCTGTATACAGATTTTACT 657
| |||| || ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 636 GCTGAT-CTATTTACATTCTTCTGTTCAATAAAACAAGATTCTGTATACAGATATTACT 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5