BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486597
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61210.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1306 0.0
> AT3G61210.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:22658678-22659870
REVERSE LENGTH=1044
Length=1044
Score = 1306 bits (707), Expect = 0.0
Identities = 771/802 (96%), Gaps = 3/802 (0%)
Strand=Plus/Plus
Query 1 AAAGATGGCTCAATTGGTTGCTTTGTCGGGAAAGCAAGCTGATGAGTACTTGAACGCAAG 60
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 AAAAATGGCTCAATTGGCTGCTTTGTCGGGAAAGCAAGCTGATGAGTACTTGAACGCAAG 111
Query 61 GCCGAAATATCCTACAATATGGTACAAAGTGTTGGCTGGTCGAACCAGCAACCATAAGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GCCGAAATATCCTACAATATGGTACAAAGTGTTGGCTGGTCGAACCAGCAACCATAAGGT 171
Query 121 GGCTTGGGATGTTGGGACCGGCAACGGTCAGGCTGCTATTGGGGTCGCTGAGTACTACCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GGCTTGGGATGTTGGGACCGGCAACGGTCAGGCTGCTATTGGGGTCGCTGAGTACTACCA 231
Query 181 GAAAGTGGTGGCAACTGATATAAATGAATCACAACTCCAACGTGCAATGAAGCACCCAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GAAAGTGGTGGCAACTGATATAAATGAATCACAACTCCAACGTGCAATGAAGCACCCAAA 291
Query 241 AGTCACTTACCATCACACTCCATCATCAATGTCCGACGACGATCTAGTGACTCTACTCGG 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AGTCACTTACTATCACACTCCATCATCAATGTCCGACGACGATCTAGTGACTCTACTCGG 351
Query 301 TGGAGAAAACTCCATAGATATCATAATAGCTGCTCAAGCTCTTCACTACTTCGACCTTAA 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 352 TGGAGAAAACTCCATAGATATCATAATAGCCGCTCAAGCTCTTCACTACTTCGACCTAAA 411
Query 361 GAGATTCTACCCCATAGTGAAACGTGTTCTTCGTAAACAAGGTGGTATCATCGCAGTTTG 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 412 GAGATTCTACCCCATAGTGAAACGTGTTCTTCGTAAACAAGGCGGTATCATCGTAGTTTG 471
Query 421 GGTTTACAACGATCTCATCATCACCCCAAAGGTTGATTCCATCATGAAACGTCTGGTGGA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 GGTTTACAACGATCTCATCATCACCCCAAAGGTTGATTCCATCATGAAACGTCTTGTGGA 531
Query 481 TTCAACATTACCTTTCAGAAACCCGACTATGAATTTAGCGTTTGATGGTTATAGAACAAT 540
|||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 532 TTCAACATTACCTTACAGAAACCCGACTATGAATTTGGCGTTTGATGGTTATAAAACAAT 591
Query 541 AGAGTTTCCTTTTAAAAACATAAGAATGGGGACTCAAGGAAGGCCTAAAGCTCTTGATAT 600
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 592 AGAGTTTCCTTTTAAAAACATTAGGATGGGGACTCAAGGAAGGCCTAAAGCTCTTGACAT 651
Query 601 TCCACACAAGCTTTCGCTTA-ATGGATTTTTAGGGTTTTTAAAATCATGGCAGCCTCTAG 659
||||||| ||||||||| | |||||||| ||||||| ||||||||||||||||||||||
Sbjct 652 CCCACACATGCTTTCGCT-AGATGGATTTCTAGGGTTCTTAAAATCATGGCAGCCTCTAG 710
Query 660 TGAAGGCAAAGGAGCAAGGAGAAGATCTTTTAACTTCTTGTATGATTGATGAGTTTAAGG 719
|||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 711 TGAAAGCAAAGGAGCAAGGAGAGGATCTTTTAACTTCTTATATGATTGATGAGTTTAAGG 770
Query 720 AAGCTTGGGGTGATGACAAACAAGTCAAGGATGTTTTCTACAAGGCATACATGCTTGCTG 779
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 771 AAGCTTGGGGTGATGATGAACAAGTCAAGGATGTTCACTACAAGGCATTTATGCTTGCAG 830
Query 780 GGAAACTTTAGGTAATTA-TAT 800
|||||||||||||||||| |||
Sbjct 831 GGAAACTTTAGGTAATTAATAT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5