BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486599
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61230.1 | Symbols: PLIM2c | GATA type zinc finger transcrip... 1264 0.0
> AT3G61230.1 | Symbols: PLIM2c | GATA type zinc finger transcription
factor family protein | chr3:22664425-22665597 REVERSE
LENGTH=912
Length=912
Score = 1264 bits (684), Expect = 0.0
Identities = 805/861 (93%), Gaps = 17/861 (2%)
Strand=Plus/Plus
Query 35 TCCATCTCTTTCGTGATTTGAaagaagaagaagaagagaTAACAATGGCGGCGTTTACAG 94
|||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 51 TCCAACTCTTTCGTAATTTGAAAGAAGAAGAAGAAGAGATACCAATGGCGGCGTTTACAG 110
Query 95 GGAC-ACTAGACAAATGCAAGGCGTGTGACAAGACGGTATACGTTATGGACTTGATGACA 153
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 GGACAAC-AGACAAATGCAAGGCGTGTGACAAGACGGTATACGTTATGGACTTGATGACT 169
Query 154 TTGGAAGGAATGCCTTATCACAAGTCATGCTTCAGGTGCAGCCATTGCAATGGCACTCTC 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 TTGGAAGGAATGCCTTATCACAAGTCATGCTTCAGGTGCAGCCATTGCAATGGCACTCTC 229
Query 214 GTGATATGTAACTACTCATCCATGGATGGAGTTTTGTATTGCAAGACCCATTTTGAACAG 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GTGATATGTAACTACTCATCCATGGATGGAGTTTTGTATTGCAAGACCCATTTTGAACAG 289
Query 274 CTCTTCAAAGAATCTGGAAATTTCAGCAAAAATTTCCAAACAGCAGGAAAGACCGAGAAA 333
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 290 CTCTTCAAAGAATCTGGAAATTTCAGCAAGAATTTCCAAACAGCTGGAAAGACCGAGAAA 349
Query 334 TCGAATGAAACGACGAGGGCTCCAAACAGGTTATCTTCGTTCTTTAGCGGAACACAAGAC 393
|||||||| |||||| |||||||||||||||||| || ||||||||||| |||||||||
Sbjct 350 TCGAATGATGCGACGAAGGCTCCAAACAGGTTATCATCCTTCTTTAGCGGCACACAAGAC 409
Query 394 AAATGTGCAGCTTGTAAGAAAACAGTTTATCCTCTAGAGAAAATGACAATGGAAGGAGAA 453
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 410 AAATGTGCAGCTTGTAAGAAAACAGTTTATCCTCTAGAGAAGATGACAATGGAAGGAGAA 469
Query 454 TCTTACCACAAGACTTGCTTCAGATGTGCACATAGTGGTTGTCCATTAACACATTCTTCA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TCTTACCACAAGACTTGCTTCAGATGTGCACATAGTGGTTGTCCATTAACACATTCTTCA 529
Query 514 TATGCTGCTCTCGATGGTATCCTCTACTGTAAGGTCCATTTCAGTCAGCTTTTCCTTGAG 573
||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||
Sbjct 530 TATGCTGCTCTCGATGGCGTCCTTTACTGTAAGGTCCACTTCAGCCAGCTTTTCCTTGAG 589
Query 574 AAAGGTAATTACAATCATGTCCTCCAAGCTGCGGCTAACCACCGTCGCAC-AGCGGCTGA 632
||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||
Sbjct 590 AAAGGTAATTACAATCATGTCCTCCAAGCCGCGGCTAACCACCGTCGCTCGA-CGGCTGA 648
Query 633 GGAAGACAAAACCGAACCCAAAGAAAATGAAGCAAACCCTACAGAAGAAGACACTTCTGA 692
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 649 GGAAGACAAAACCGAACCCAAAGAAGATGAAGCAAACCCTACAGAAGAAGAAACTTCTGA 708
Query 693 TGCAGCAGGTGAAGAACATGAGTCGTCCTAAAT--CCAGGAGTTCCTTT-GTGAAATATA 749
|||||||| |||||||||||| || | |||| || ||||||||||| ||||||||||
Sbjct 709 TGCAGCAGCTGAAGAACATGAATCCTAAGAAATATCCGGGAGTTCCTTTTGTGAAATATA 768
Query 750 TA-A-TCATAAATTGTTAAAGAGCACATATTTTTTAAGTACTGCAATGAAGTAGACTCAA 807
|| | |||||||||||||||||| | | |||| |||| || |||||||||||||||||||
Sbjct 769 TATAATCATAAATTGTTAAAGAG-ATA-ATTTCTTAACTAATGCAATGAAGTAGACTCAA 826
Query 808 ATTTTGTTCT-GTTTCTTTTTATGGAACTGCATATTATTCTATAATTTTGTAAAGTGATT 866
|||||||| | ||||||| |||||||||| |||||||||| | || ||||||| |||
Sbjct 827 ATTTTGTT-TAGTTTCTTCTTATGGAACTATATATTATTCTGT--TT--GTAAAGTAATT 881
Query 867 TTATTCAAGTTTATGAGTAAT 887
||||||||||||||||||||
Sbjct 882 ATATTCAAGTTTATGAGTAAT 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5