BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486599 Length=888 Score E Sequences producing significant alignments: (Bits) Value AT3G61230.1 | Symbols: PLIM2c | GATA type zinc finger transcrip... 1264 0.0 > AT3G61230.1 | Symbols: PLIM2c | GATA type zinc finger transcription factor family protein | chr3:22664425-22665597 REVERSE LENGTH=912 Length=912 Score = 1264 bits (684), Expect = 0.0 Identities = 805/861 (93%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 35 TCCATCTCTTTCGTGATTTGAaagaagaagaagaagagaTAACAATGGCGGCGTTTACAG 94 |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 51 TCCAACTCTTTCGTAATTTGAAAGAAGAAGAAGAAGAGATACCAATGGCGGCGTTTACAG 110 Query 95 GGAC-ACTAGACAAATGCAAGGCGTGTGACAAGACGGTATACGTTATGGACTTGATGACA 153 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111 GGACAAC-AGACAAATGCAAGGCGTGTGACAAGACGGTATACGTTATGGACTTGATGACT 169 Query 154 TTGGAAGGAATGCCTTATCACAAGTCATGCTTCAGGTGCAGCCATTGCAATGGCACTCTC 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 TTGGAAGGAATGCCTTATCACAAGTCATGCTTCAGGTGCAGCCATTGCAATGGCACTCTC 229 Query 214 GTGATATGTAACTACTCATCCATGGATGGAGTTTTGTATTGCAAGACCCATTTTGAACAG 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 GTGATATGTAACTACTCATCCATGGATGGAGTTTTGTATTGCAAGACCCATTTTGAACAG 289 Query 274 CTCTTCAAAGAATCTGGAAATTTCAGCAAAAATTTCCAAACAGCAGGAAAGACCGAGAAA 333 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 290 CTCTTCAAAGAATCTGGAAATTTCAGCAAGAATTTCCAAACAGCTGGAAAGACCGAGAAA 349 Query 334 TCGAATGAAACGACGAGGGCTCCAAACAGGTTATCTTCGTTCTTTAGCGGAACACAAGAC 393 |||||||| |||||| |||||||||||||||||| || ||||||||||| ||||||||| Sbjct 350 TCGAATGATGCGACGAAGGCTCCAAACAGGTTATCATCCTTCTTTAGCGGCACACAAGAC 409 Query 394 AAATGTGCAGCTTGTAAGAAAACAGTTTATCCTCTAGAGAAAATGACAATGGAAGGAGAA 453 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 410 AAATGTGCAGCTTGTAAGAAAACAGTTTATCCTCTAGAGAAGATGACAATGGAAGGAGAA 469 Query 454 TCTTACCACAAGACTTGCTTCAGATGTGCACATAGTGGTTGTCCATTAACACATTCTTCA 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 TCTTACCACAAGACTTGCTTCAGATGTGCACATAGTGGTTGTCCATTAACACATTCTTCA 529 Query 514 TATGCTGCTCTCGATGGTATCCTCTACTGTAAGGTCCATTTCAGTCAGCTTTTCCTTGAG 573 ||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||| Sbjct 530 TATGCTGCTCTCGATGGCGTCCTTTACTGTAAGGTCCACTTCAGCCAGCTTTTCCTTGAG 589 Query 574 AAAGGTAATTACAATCATGTCCTCCAAGCTGCGGCTAACCACCGTCGCAC-AGCGGCTGA 632 ||||||||||||||||||||||||||||| |||||||||||||||||| | | ||||||| Sbjct 590 AAAGGTAATTACAATCATGTCCTCCAAGCCGCGGCTAACCACCGTCGCTCGA-CGGCTGA 648 Query 633 GGAAGACAAAACCGAACCCAAAGAAAATGAAGCAAACCCTACAGAAGAAGACACTTCTGA 692 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 649 GGAAGACAAAACCGAACCCAAAGAAGATGAAGCAAACCCTACAGAAGAAGAAACTTCTGA 708 Query 693 TGCAGCAGGTGAAGAACATGAGTCGTCCTAAAT--CCAGGAGTTCCTTT-GTGAAATATA 749 |||||||| |||||||||||| || | |||| || ||||||||||| |||||||||| Sbjct 709 TGCAGCAGCTGAAGAACATGAATCCTAAGAAATATCCGGGAGTTCCTTTTGTGAAATATA 768 Query 750 TA-A-TCATAAATTGTTAAAGAGCACATATTTTTTAAGTACTGCAATGAAGTAGACTCAA 807 || | |||||||||||||||||| | | |||| |||| || ||||||||||||||||||| Sbjct 769 TATAATCATAAATTGTTAAAGAG-ATA-ATTTCTTAACTAATGCAATGAAGTAGACTCAA 826 Query 808 ATTTTGTTCT-GTTTCTTTTTATGGAACTGCATATTATTCTATAATTTTGTAAAGTGATT 866 |||||||| | ||||||| |||||||||| |||||||||| | || ||||||| ||| Sbjct 827 ATTTTGTT-TAGTTTCTTCTTATGGAACTATATATTATTCTGT--TT--GTAAAGTAATT 881 Query 867 TTATTCAAGTTTATGAGTAAT 887 |||||||||||||||||||| Sbjct 882 ATATTCAAGTTTATGAGTAAT 902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43352068861 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5