BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486603
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61260.1 | Symbols: | Remorin family protein | chr3:2267523... 1214 0.0
AT2G42388.1 | Symbols: | other RNA | chr2:17650225-17651083 FO... 313 2e-84
> AT3G61260.1 | Symbols: | Remorin family protein | chr3:22675238-22676788
REVERSE LENGTH=891
Length=891
Score = 1214 bits (657), Expect = 0.0
Identities = 783/843 (93%), Gaps = 12/843 (1%)
Strand=Plus/Plus
Query 1 CTCTCTGTTTCTTCGGCTGAGA---GACGACTATGGCTGAGGAACAGAAGATAGCGTTAG 57
|||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 56 CTCTCTATTTCTTCGGCTGAGAGGCGGCGACTATGGCGGAGGAACAGAAGATAGCGTTAG 115
Query 58 CCTCAGAATCTCCGGCGAAGGTCCCGGCTCCAGCTCCCGCAGAGATtccggctccagctc 117
|||||||||||||||||||| || |||| ||||| ||||| | |||||||||||||
Sbjct 116 AATCAGAATCTCCGGCGAAGGTTACGACTCCTGCTCCAGCAGATACACCGGCTCCAGCTC 175
Query 118 ccgcagagattccggctccagctccggctccggctccgactccggctGATCTCACGAAAG 177
| |||||||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 176 CGGCAGAGATTCCGGCTCCA------GCTCCAGCTCCGACTCCGGCTGATGTCACGAAAG 229
Query 178 ATGTTGGAGAGGAGCAAATTCAAAACCCACCTCCGGAGCAAATTTCCGATGACTCCAAAG 237
| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 230 ACGTTGCAGAGGAGAAAATTCAAAACCCACCTCCGGAGCAAATTTTCGATGACTCCAAAG 289
Query 238 CCCTCGCTGTTGTCGAGAAACCTGTAGAAGAGCCTGCACCGGTGAAATCTTCGTCTGCTT 297
|||| ||||||| |||||||||||||||||||||||||||| |||| || ||||||| |
Sbjct 290 CCCTTACTGTTGTTGAGAAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCAT 349
Query 298 CGCTTGATAGAGATGTTAAGCTAGCTGATTTGTCAAAGGAGAAGAGATTGTCTTTTGTCA 357
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 350 CGCTCGATAGAGATGTTAAGCTAGCTGATTTGTCAAAGGAAAAGAGATTGTCTTTCGTCA 409
Query 358 GAGCGTGGGAAGAGAGCGAAAAGAGCAAAGCAGAGAACAAAGCTGAGAAGAAGATTGCTG 417
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 410 GAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAAGCTGAGAAGAAGATTGCAG 469
Query 418 ATGTTCATGCTTGGGAAAACAGCAAGAAAGCAGCTCTTGAAGCGCAACTCAAGAAAATCG 477
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 470 ATGTTCATGCTTGGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCG 529
Query 478 AGGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAAGTTGCAG 537
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 530 AGGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGGTTGCAG 589
Query 538 CCATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAGCTAAGCGTGGAGAAGACA 597
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CGATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAGCTAAGCGTGGAGAAGACG 649
Query 598 TTCTTAAAGCAGAAGAAACGGCTGCTAAATACAGAGCCACTGGAATTGTTCCAAAGGCAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TTCTTAAAGCAGAAGAAACGGCTGCTAAATACAGAGCCACTGGAATTGTTCCAAAGGCAA 709
Query 658 CTTGTGGATGTTTCTAATCTTGAATTTGCAAATCAAATTTTCAAGACTTTGTAACTGTAA 717
||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 710 CTTGTGGATGTTTCTAATCTTGAATTTGCGAATCAAAGTTTCAAGACTTCGTAACTGTAA 769
Query 718 AGTGTAAACAAATTTCTCTCTTCTCTTCAATGGCTTGTAATGTTGTTTGTATATTGATTT 777
||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 770 AGTGTAATCAAATTTCTCTGTTCTCTTTAATGGCTTGTAATGTTGTTTGTATATTGATTT 829
Query 778 TGTGTGCAACAATCAGAGTGAAAAATATGTT-CATTGATTATGTT-CTGCAATTTTCTCA 835
|||||| ||||||||||||||||||||||| ||||| || | || | ||||||||||||
Sbjct 830 TGTGTGTGACAATCAGAGTGAAAAATATGTTTCATTGTTT-TCTTTCCGCAATTTTCTCA 888
Query 836 AGC 838
|||
Sbjct 889 AGC 891
> AT2G42388.1 | Symbols: | other RNA | chr2:17650225-17651083
FORWARD LENGTH=631
Length=631
Score = 313 bits (169), Expect = 2e-84
Identities = 289/342 (85%), Gaps = 27/342 (8%)
Strand=Plus/Plus
Query 441 AAGAAAGCAGCTCTTGAAGCGCAACTCAAGAAAATCGAGGAGCAACTAGAGAAGAAGAAA 500
|||||||||||| | |||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 284 AAGAAAGCAGCTGTCGAAGTGCAACTCAAGAAAATGGAGGAGGAACTAGAGAAGAAGAAA 343
Query 501 GCA-GAGTATGCAGAGAGGATGAAGAATAAAGTTGCAGCCATTCACAAGGAAGCAGAAGA 559
||| ||||||||||||||||| |||| | ||| ||| | ||||||||||||||||||
Sbjct 344 GCAGGAGTATGCAGAGAGGAT---GAATTAGGTTTCAGTGACTCACAAGGAAGCAGAAGA 400
Query 560 GAGAAGAGCAATGATTGAAGCTAAGCGTGGAGAAGACATTCTTAAAGCAGAAGAAACGGC 619
||||| ||||||||||||| |||||||||||||| | | ||||||||||||
Sbjct 401 AAGAAGTGCAATGATTGAAGGTAAGCGTGGAGAAG-----C----A--AGAAGAAACGGC 449
Query 620 TGCT-AAATACAGAGCCACTGGAATTGTTCCAAAGGCAACTTGTGGATGTTTCTAATCTT 678
|||| |||||| | |||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 450 TGCTAAAATACTGGGCCATTAGAATTGTTCCAAAGGCAACTTGTGGATGTTTCCAATCTT 509
Query 679 GAATTTGCAAATCAAATTTTCAAGACTTTGTAACTGTAAAGTGTAAACAAATTTCTCTCT 738
|| ||| ||||||| |||||| || ||| | | ||| |||||| |||||||||
Sbjct 510 GAGTTTACAAATCATTTTTTCAGGA-TTT-T---T-TAAC-TGTAAA----TTTCTCTCT 558
Query 739 TCTCTTCAATGGCTTGTAATGTTGTTTGTATATTGATTTTGT 780
||||||||||||||||||||||| ||||||||||||||||||
Sbjct 559 TCTCTTCAATGGCTTGTAATGTTTTTTGTATATTGATTTTGT 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5