BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486604
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61270.1 | Symbols: | Arabidopsis thaliana protein of unkno... 2381 0.0
AT2G45830.1 | Symbols: DTA2 | downstream target of AGL15 2 | ch... 1083 0.0
> AT3G61270.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr3:22678151-22680379 FORWARD LENGTH=1783
Length=1783
Score = 2381 bits (1289), Expect = 0.0
Identities = 1461/1545 (95%), Gaps = 8/1545 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATGAATATCAAAGCCGACCAAC---ATAAACCGGTGACGTTTCCTCGAAAAAGC 57
||||||||||||| ||| | || ||||| ||||| ||||||| |||||||||||||||
Sbjct 120 ATGAAGATGAATAACAACGACGGCCAACATAATAAAACGGTGACATTTCCTCGAAAAAGC 179
Query 58 ATCGTGAAGGCTACTGTTTTCATCGTCGTTCTATTCATTTCAGCTGCTCTCTTAGACTTT 117
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 ATCGTGAAGGCTACTGTTTTCATCGTCGTTCTATTCATTTCAGCTGCTATCTTAGACTTA 239
Query 118 CTTGGCTATCTCGATTTCAATGCTTTTGCAGGTTTAAAGCGAATAACGAAGAGAAAAGAA 177
|| ||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct 240 CTGGGCTATCTCGATTTCAATGCTTTTGCAGGTTTAAAGCTAACAACAAAGACAAAAGAA 299
Query 178 CCAAATCCTTACGGATGCGACTTCGTACAAAACCAATCAAACCAAACTCATTTCTCACAA 237
||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||
Sbjct 300 CCAAATCCTTACGGATGCGACTTCGTACAGAACCAATCAAGTCAAACTCCTATCTCACAA 359
Query 238 AACCGTGCCTCGAGATTAAATCCTATC--C-GTTCAAAATCATCCACGTGTCCTTCTTAT 294
||||| ||||||||||| || | | | |||||||||||||||||||||||||||||
Sbjct 360 AACCGCAAATCGAGATTAAACCCCAACAACAGTTCAAAATCATCCACGTGTCCTTCTTAT 419
Query 295 TTCCGTTGGATCCATGAAGATCTACGGCCGTGGAAACAAACGGGGATAACTAGAGGGATG 354
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 TTCCGTTGGATCCATGAAGATCTACGGCCATGGAAACAAACGGGGATAACTAGAGGGATG 479
Query 355 ATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGATCCGTAACGGGAAGGCGTAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGATCCGTAACGGGAAGGCGTAC 539
Query 415 GTTAAGAGATATAGGAAGTCAATTCAAACAAGAGATGATTTTACTCTGTGGGGAATCGTA 474
||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 540 GTTAAGAGATATAAGAAGTCAATACAAACAAGAGATGAATTTACTCTGTGGGGAATCTTA 599
Query 475 CAGTTGTTACGGTGGTACCCTGGTAAATTACCTGATCTGGAGCTTATGTTCGACGCTGAT 534
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 600 CAGTTGTTACGGTGGTACCCTGGTAAATTACCTGATCTCGAGCTAATGTTCGACGCTGAT 659
Query 535 GACCGTCCCGTCGTCCGATCAGCTGACTTTATTGGTCAACAGAAGAAACCACCTCCAGTT 594
|| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 660 GATCGTCCCGTCGTCCGATCAGTTGACTTTATTGGTCAACAGAAGGAACCACCTCCAGTT 719
Query 595 TTCCGTTACTGTTCAGATGACGCCAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGG 654
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 TTCCGTTACTGTTCAGATGACGCAAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGG 779
Query 655 GGCTGGGCTGAAGTGAACATAAAGCCAT-GGGGAGAATCGTTGGAGGCAATAAAAGAAGG 713
|||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||
Sbjct 780 GGCTGGGCTGAAGTGAACGTAAAACCATGGGGGA-AATCGTTGGAGGCAATAAAAGAAGG 838
Query 714 GAACAATATGACGCAATGGAAGGAACGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTA 773
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 839 GAACAGTATGACGCAATGGAAGGACCGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTA 898
Query 774 TGTTGATCCTGGAAGAGGAGATCTTCTCAAGTGTAATGTTTCAGAACATGAAGAGTGGAA 833
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 899 TGTTGATCCTGGAAGAGGAGATCTTCTCAAGTGTAATGCTACAGAACATGAAGAGTGGAA 958
Query 834 TACTCGTCTCTATATTCAGGATTGGGATAAAGAATCAAAAGAAGGATACAAGAACTCAAA 893
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 959 TACTCGTCTCTATATTCAGGATTGGGATAAAGAAACAAAAGAAGGATTCAAGAACTCAAA 1018
Query 894 TCTAGAGAACCAGTGCACCCATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGT 953
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCTAGAGAACCAGTGCACTCATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGT 1078
Query 954 TAGTGAGAAATACATAATGGCATGCGACTCAATGACATTATATGTTAAACCAAGATTCTA 1013
||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1079 TAGCGAGAAATACATAATGGCATGTGACTCAATGACATTATATGTAAAACCAAGATTCTA 1138
Query 1014 CGATTTCTACATACGAGGAATGATGCCATTACAACATTATTGGCCAATCAGAGACGATTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGATTTCTACATACGAGGAATGATGCCATTACAACATTATTGGCCAATCAGAGACGATTC 1198
Query 1074 CAAGTGTACTTCTCTCAAATTCGCCGTACATTGGGGAAATACACACGTGGACAAGGCTCG 1133
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1199 CAAGTGTACTTCTCTCAAATTCGCCGTACATTGGGGCAATACACACGAGGACAAGGCTCG 1258
Query 1134 TGAGATAGGAGAGCTAGGGAGTAGATTTATAAGAGAGGAAGTGAATATGAAGTATGTGTA 1193
||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1259 TGAGATAGGAGAGGTAGGAAGTAGATTTATAAGAGAGGAGGTGAATATGCAGTATGTGTA 1318
Query 1194 TGACTACATGTTTCATTTACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGAT 1253
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGACTATATGTTTCATTTACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGAT 1378
Query 1254 TCCTTTGGATGCGGAGGAGATCACGCCGGATAGTATGGGATGTCCCGCGACGGAACGGTG 1313
||| || ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1379 TCCGTTAGATGCAGAGGAGATCACGCCGGATAGTATGGGGTGTCCCGCGACGGAAAGGTG 1438
Query 1314 GAGAGATTTCATGGCGGAGTCTATGGTTCTATCTCCAAGTGAAGAGTCTCCTTGTGAAAT 1373
||||||||| | ||||||||| ||| || ||||||| |||||||||||||||||||| ||
Sbjct 1439 GAGAGATTTTAAGGCGGAGTCAATGATTATATCTCCTAGTGAAGAGTCTCCTTGTGAGAT 1498
Query 1374 GCTTCCTCCTTATGACCCTCTAGCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAAC 1433
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GCTTCCTCCTTATGATCCTCTAGCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAAC 1558
Query 1434 ACGTCAGGTTGAGTTGTGGGAAAACAAATACTTTCAAGATCTTACCAACAAAACTTAAAT 1493
|||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1559 TCGTCAGGTTGAGTTGTGGGAAAACCAATACTTTCAAAATCTTACCAACAAACCTTAAAT 1618
Query 1494 TGTTCTGtttttttCTTCCTCATTGACGAGATCAACCGCAACCAA 1538
|||| |||||||| |||| || |||||||||||||||||||||||
Sbjct 1619 TGTTTTGTTTTTTCCTTCTTCGTTGACGAGATCAACCGCAACCAA 1663
> AT2G45830.1 | Symbols: DTA2 | downstream target of AGL15 2 |
chr2:18866061-18868542 FORWARD LENGTH=2033
Length=2033
Score = 1083 bits (586), Expect = 0.0
Identities = 1030/1240 (83%), Gaps = 47/1240 (4%)
Strand=Plus/Plus
Query 267 TTCAA-AATCATCCACGTGTCCTTCTTATTTCCGTTGGATCCATGAAGATCTACGGCCGT 325
||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 602 TTCAAGAAT-ATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGGCCAT 660
Query 326 GGAAACAAAC-GGGGATAACTAGAGGGATGATCGAAG-AAGCGAGTAGAACGGCGCATTT 383
||||| | || || | |||| ||||||||| | | || |||| || || |||||||||||
Sbjct 661 GGAAAGAGACAGGTG-TAACGAGAGGGATGCTTG-AGAAAGCCAGGAGGACGGCGCATTT 718
Query 384 TAGATTGGTGATCCGT-AACGGGAAG-GCGTACGTTAAGAGATATAGGAAGTCAATTCAA 441
||| | || |||| | ||||| || | ||||||||||| |||||| |||||||| |||
Sbjct 719 CAGAGTAGTAATCC-TCGACGGG-AGAGTGTACGTTAAGAAATATAGAAAGTCAATCCAA 776
Query 442 ACAAGAGATGATTTTACTCTGTGGGGAATCGTACAGTTGTTACGGTGGTACCCTGGTAAA 501
|||||||| | ||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 777 ACAAGAGACGTTTTTACTCTGTGGGGCATCGTACAGTTACTACGGTGGTACCCAGGTAGG 836
Query 502 TTACCTGATCTGGAGCTTATGTTCGACGCTGATGACCGTCCCGTCGTCCGATC-AGCTGA 560
||||| ||||| ||||| ||||| ||| | ||||| | || ||||||||| | ||
Sbjct 837 TTACCGGATCTTGAGCTCATGTTTGACCCAGATGATAGACCAACCGTCCGATCTA-AAGA 895
Query 561 CTTT-ATTGGTCAAC-AGA--AGAAACCACCTCCAGTT-TTCCGTTACTGTTCAGATGAC 615
|||| | ||||||| | | | || ||||| || |||||||| || || ||||||
Sbjct 896 CTTTCA-AGGTCAACAACACCCGGCCCCGCCTCC-TTTGTTCCGTTATTGCTCTGATGAC 953
Query 616 GCCAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGGGGCTGGGCTGAAGTGAACATA 675
||||||||||| ||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 954 GCCAGCTTGGATATTGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATA 1013
Query 676 AAGCCATGGGGA-GAATCGTTGGAGGCAATAAAAGAAGGGAACAATATGACGCAATGGAA 734
||||| | |||| ||||| | | ||| ||| |||||||||| || ||||| ||||||||
Sbjct 1014 AAGCC-TTGGGATAAATCGCTAGTGGCGATAGAAGAAGGGAATAAGATGACTCAATGGAA 1072
Query 735 GGAACGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTATGTTGATCCTGGAAGAGGAGA 794
|| ||||||||||| |||||||||||||| || ||| |||| | ||| ||| ||||
Sbjct 1073 AGACCGCGTGGCGTATGCTTATTGGAGAGGAAACCCTAATGTGGCTCCAACTAGAAGAGA 1132
Query 795 TCTTCTCAAG-TGTAATGTTTCAGAACATGAAGAGTGGAATACTCGTCTCTATATTCAGG 853
||||||| || |||||||| |||| || ||||| ||||| || |||||||| |||||||
Sbjct 1133 TCTTCTC-AGATGTAATGTCTCAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGG 1191
Query 854 ATTGGGATAAAGAATCAAAAGAAGGATACAAGAACTCAAATCTAGAGAACCAGTGCACCC 913
||||||||| ||| |||| |||||||| ||||||||| || ||||||||||| |||||||
Sbjct 1192 ATTGGGATAGAGAGTCAAGAGAAGGATTCAAGAACTCTAACCTAGAGAACCAATGCACCC 1251
Query 914 ATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGTTAGTGAGAAATACATAATGG 973
| || |||||||| ||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1252 ACAGGTACAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGG 1311
Query 974 CATGCGACTCAATGACATTATATGTTAAACCAA-GATTCTACGATTTCTACATACGAGGA 1032
|||| || ||||||||||| || || | ||| | | ||||| ||||| ||| ||||||||
Sbjct 1312 CATGTGATTCAATGACATTGTACGTGAGACCTATG-TTCTATGATTTTTACGTACGAGGA 1370
Query 1033 ATGATGCCATTACAACATTATTGGCCAATCAGAGACGAT-TCCAAGTGTACTTCTCTCAA 1091
|||||||||||||||||||| ||||||||||||||| | || ||||||||||| |||||
Sbjct 1371 ATGATGCCATTACAACATTACTGGCCAATCAGAGAC-ACCTCTAAGTGTACTTCCCTCAA 1429
Query 1092 ATTCGCCGTACATTGGGGAAATACACACGTGGACAAGGCTCGTGAGATAGGAGA-GCTAG 1150
|||||||||||||||||| ||||| || ||||| |||| || |||||||||| | ||
Sbjct 1430 ATTCGCCGTACATTGGGGGAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGA-AG 1488
Query 1151 GGAGTAGATTTATAAGAGAGGAAGTGAATATG-AAGTATGTGTATGACTACATGTTTCAT 1209
||||||| ||||| |||||||||||||| ||| || |||||||||||||||||||| |||
Sbjct 1489 GGAGTAGGTTTATTAGAGAGGAAGTGAAAATGGAA-TATGTGTATGACTACATGTTCCAT 1547
Query 1210 TT-ACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGATTCCTTTGG-ATGCGG 1267
|| | | || |||||||||| ||| ||||| ||||| || |||||||| | || | ||
Sbjct 1548 TTGA-TGAACGAGTATGCAAAACTTTTGAAGTTTAAACCAGAGATTCCGTGGGGA-GCC- 1604
Query 1268 A-GGAGATCACGCCGGATAGTATGGGATGTCCCG-CGACGGAACGGTGGAGAGATTTCAT 1325
| |||||| |||||||||| |||||| || | || |||||| ||||||||||||||||||
Sbjct 1605 ACGGAGATTACGCCGGATATTATGGGCTG-CTCGGCGACGGGACGGTGGAGAGATTTCAT 1663
Query 1326 GGCGGAGTCTATGGTTCTATCTCCAAGTGAAGAGTCTCCTTGTGAAATGC-TTCCTCCTT 1384
|| ||||||||||||| | | ||| |||||||||||||||||||| |||| ||| |||||
Sbjct 1664 GGAGGAGTCTATGGTTATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTC-TCCTT 1722
Query 1385 ATGACCCTC-TAGCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAACACGTCAGGTT 1443
| |||||| | | |||||||||| |||||||||||||| ||||||| || ||||| |||
Sbjct 1723 TTAACCCTCAT-GATTTAAAAGAGATTCTTGAGAGAAAAACTAATTTGACTCGTCAAGTT 1781
Query 1444 GAGTTGTGGGAAAA-CAAATACTTTCAAGATCTTA-CCAA 1481
|||| ||||||| | ||| || ||||| ||| ||| ||||
Sbjct 1782 GAGTGGTGGGAAGATCAA-TATTTTCATGAT-TTAGCCAA 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75903224040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5