BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486610

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61370.1 | Symbols:  | Protein of unknown function (DUF3245)...   763    0.0  
  AT4G07940.1 | Symbols:  | Protein of unknown function (DUF3245)...   355    2e-97


> AT3G61370.1 | Symbols:  | Protein of unknown function (DUF3245) 
| chr3:22706312-22708509 FORWARD LENGTH=625
Length=625

 Score =  763 bits (413),  Expect = 0.0
 Identities = 475/504 (94%), Gaps = 7/504 (1%)
 Strand=Plus/Plus

Query  1    GTGGTGGTACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACAGA  60
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  93   GTGGTGATACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACAGA  152

Query  61   TTCTTAAAACAGATAAGGCACAAAAACTTGCTGAGAAGTGGGTTGCCAGTATGACGAGGC  120
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  153  TTTTTAAAACAGATAAGGCACAAAAACTTGCTGAGAAGTGGGTTGCCAGTATGACGAGGC  212

Query  121  CTACAGAGGATGATCCTATCGAGACTGCACAAGAAGAACGACCACACAGACTTGGACTTG  180
            | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct  213  CCACAGAGGATGATCCTATTGAGACTGCACAAGAAGAACGACCACACAGGCTTGGACTTG  272

Query  181  GTGCTAAAGTGTCACGACAAACAAAGCGTAGACCCTCAGACGACCCTCTCGATCAGAAAC  240
            ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  273  GTGCTCAAGTGTCACGACAAACAAAGCGTAGACCTTCAGACGACCCTCTCGATCAGAAAC  332

Query  241  TAGAAGCCAAGTTTGCTGCAGGGAAAAGAAAAAATGCAAGATCGGTTGCAGAATCCGCTG  300
            ||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||
Sbjct  333  TAGAAGCCAAGTTTGCTGCAGTGAAAAGAAAAAATGCAAGATTGGTTGCAGAAGCTGCTG  392

Query  301  GTTCTAGTAAGAACGTTGGTGATGACAGTGAGGGTGATGATGAATCAGAAAGCAAAAGTC  360
            ||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||| |
Sbjct  393  GTTCTAGTAAGAATGCCGGTGATGACAGTGAGGATGATGATGAATCAGAAAGCAAAAGCC  452

Query  361  AAGCATTCGGCAAGAAAAAGAAAAATACAAGTACGCCTCATTAGA-TTCTGTGATGTACT  419
            ||||||| || ||||||||||||||||||||||| |||||||||| || |||||||||||
Sbjct  453  AAGCATTTGGTAAGAAAAAGAAAAATACAAGTACTCCTCATTAGAGTT-TGTGATGTACT  511

Query  420  ATATAGTTTAA-GTCATGGCCTTGTATTTGTTTTGATTGTTGGCA-AAGAGCTAAAACGC  477
            |||  ||  || ||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  512  ATA--GTAAAAAGTCATGGCCTTGTATTTGTTTTGATTGTTGG-ATAAGAGCTAAAACGC  568

Query  478  TTAATTGTAGTTCTATTGGAACAT  501
             |||||||||||||||||||||||
Sbjct  569  ATAATTGTAGTTCTATTGGAACAT  592


> AT4G07940.1 | Symbols:  | Protein of unknown function (DUF3245) 
| chr4:4792673-4794109 FORWARD LENGTH=420
Length=420

 Score =  355 bits (192),  Expect = 2e-97
 Identities = 220/234 (94%), Gaps = 0/234 (0%)
 Strand=Plus/Plus

Query  171  CTTGGACTTGGTGCTAAAGTGTCACGACAAACAAAGCGTAGACCCTCAGACGACCCTCTC  230
            ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  187  CTTGGACTTGGTGCTCAAGTGTCACGACAAAAAAAGCGTAGACCCTCAGACGACCCTCTC  246

Query  231  GATCAGAAACTAGAAGCCAAGTTTGCTGCAGGGAAAAGAAAAAATGCAAGATCGGTTGCA  290
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  247  GATCAGAAACTAGAAGCCAAGTTTGCTGCAGGGAAAAGAAAAAATGCAAGATTGGTTGCA  306

Query  291  GAATCCGCTGGTTCTAGTAAGAACGTTGGTGATGACAGTGAGGGTGATGATGAATCAGAA  350
            ||||| ||||||||||||||||| |  |||||||||| ||||| || |||||||||||||
Sbjct  307  GAATCTGCTGGTTCTAGTAAGAATGCCGGTGATGACAATGAGGATGGTGATGAATCAGAA  366

Query  351  AGCAAAAGTCAAGCATTCGGCAAGAAAAAGAAAAATACAAGTACGCCTCATTAG  404
            |||||||| |||||||| || | |||||||||||||||||||||||||||||||
Sbjct  367  AGCAAAAGCCAAGCATTTGGTATGAAAAAGAAAAATACAAGTACGCCTCATTAG  420


 Score =  132 bits (71),  Expect = 4e-30
 Identities = 90/99 (91%), Gaps = 2/99 (2%)
 Strand=Plus/Plus

Query  1    GTGGTGGTACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACAGA  60
            |||||| ||||||||||||||||||||||||||||| ||||||||||||| |  ||||||
Sbjct  89   GTGGTGATACTCTAGTAGCAATGACAACGGAAACGGAAAAGAAGAAGGGACCAACACAGA  148

Query  61   TTCTTAAAACAGATAAGGCA-CAAAAACTTGCTGAGAAG  98
            ||||||||||||| |||||| | ||| ||||||||||||
Sbjct  149  TTCTTAAAACAGACAAGGCAACTAAA-CTTGCTGAGAAG  186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24916136912


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5