BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486612
Length=2420
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61380.1 | Symbols: | Phosphatidylinositol N-acetyglucosami... 3561 0.0
> AT3G61380.1 | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase
subunit P-related | chr3:22708482-22711279
REVERSE LENGTH=2444
Length=2444
Score = 3561 bits (1928), Expect = 0.0
Identities = 2287/2453 (93%), Gaps = 54/2453 (2%)
Strand=Plus/Plus
Query 1 ATGGAGA-AAATTTGTCGGAGAAATCTTAAAAGAGAAGGAT-TCGATGGTATAGGATGTG 58
||||||| ||| |||||||||||||||| |||||||||| | || |||||||||||||||
Sbjct 1 ATGGAGAGAAA-TTGTCGGAGAAATCTTGAAAGAGAAGG-TATCAATGGTATAGGATGTG 58
Query 59 TGTGGGTGTTCATAAGTCTCTTTGGATCTAACCAGAAACGTCTCTTGATGGATAACAAAC 118
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TGTGGGTGTTCATTAGTCTCTTTGGATCTAACCAGAAACGTCTCTTGATGGATAACAAAC 118
Query 119 GTGGAAGCAAAAGACTTTCAGGTAATGAGATGAAGCAGATTACATGTTCTTGCGAGAGCT 178
||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 119 GTGGAAGCAAACGAGTTTCAGGTAATGAAATGAAGCAGATTACATGTTCTTGTGAGAGCT 178
Query 179 CTCATGAGAGTGTTGATGA-G--GATATCGATGTTTCGGTTGCTGGTGATGAACATGTAG 235
||||||||||||||||||| | |||||| |||||||||| || ||||||||||||||||
Sbjct 179 CTCATGAGAGTGTTGATGAGGAAGATATCCATGTTTCGGTCGCCGGTGATGAACATGTAG 238
Query 236 AGACTGAGGTTTGTAAGAGTCTAGTTGATGAATCTGACGAGAAATTCAAAGAGATTATCA 295
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 AGACTGAGGTTTGTAAGAGTCTAGTTGATGAATCTGAAGAGAAATTCAAAGAGATTATCA 298
Query 296 AACGTTTGATAGCTCAGAAAGAAGGAGAGGTTCAAACCTGTAAGGACTTATTGGAGGCTT 355
|||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 299 AACGGTTGATAGCTCAGAAAGAAGGAGAGATCCAAACCTGTAAAGACTTATTGGAGGCTT 358
Query 356 TTCATGTTTTGGGTTCT---GAAGAAGAATCATTCCTCAAGAAGAAGATTTCACATGAAG 412
||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 359 TTCATGTTTTGGGTTCTGAAGAAGAAGAATCATTCCTCAAGAAGAAGCTTTCAAATGAAG 418
Query 413 ATGATCAAACCTTGGGAGATTCTAAGAGAGTTGAAGAAGACAACAAGCGTGGAGTAGTAT 472
||| ||||||||||||||||||||||||||| ||||||| || |||| || ||||||||
Sbjct 419 ATGCTCAAACCTTGGGAGATTCTAAGAGAGTAGAAGAAG--AA-AAGCCTGAAGTAGTAT 475
Query 473 CAAAGCAAGAGGCGGTGGTAATACCGAAGAGGAAAGCTAACTTTTTCAGCAGGAAATGGA 532
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CGAAGCAAGAGGCGGTGGTGATACCGAAGAGGAAAGCTAACTTTTTCAGCAGGAAATGGA 535
Query 533 AATCAGATGAGAGGAGAAACAGATCTCAAGTTGCAAAAACTATTGTGGTTTTGAAACCTG 592
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 536 AATCAGAAGAGAGGAGAAACAGATCTCAAGTTGCAAAAACAATTGTGGTTTTGAAACCTG 595
Query 593 GTCCAAATAGTTTGGATGTTGATTCTTCATCTGGAAC-ACATTCTACTGGCAACAAGTCG 651
||||||||| ||||||||||||||||||| |||| || |||||||||| |||||||||
Sbjct 596 GTCCAAATACTTTGGATGTTGATTCTTCAACTGG-ACTGCATTCTACTGCCAACAAGTCC 654
Query 652 AAAACCGGGaaaaaaaTTTCTCGCTTTCTTATCGGTTTAATCAAGGGAAGACTACAATCT 711
|||||||||| || | |||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 655 AAAACCGGGAGAACATTTTCTCGCTTCCTTATCGGTTTAGTCAAGAGAAGACTACAATCT 714
Query 712 GCTGTTAGAAAGAAGTCATGTGATGTTCCTGCTGATAAGATGAGCCAAAACTGTTGTATG 771
|||||| |||||||||||||||||||| ||| |||||||| |||||||||||||| || |
Sbjct 715 GCTGTTGGAAAGAAGTCATGTGATGTTTCTGTTGATAAGAGGAGCCAAAACTGTTCTACG 774
Query 772 CAAGAAGAGATACAGAGTAAATC--A-GAGAAGC---ATGTTTCGGATAAAGAAGAACCG 825
||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 775 CAAGAAGAGATACAGAGTAAATCAGAGGAGAAGCATGATGTTTCGGATAAAGAAGAACCG 834
Query 826 GTCTGTAACGAAAGAACGACCCAGGATGATAAAGAGGAGACTATCTACTCAAGCGAAGAT 885
||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 835 TTCTGTGACGAAAGAACGACCGAGGATGGTAAAGAGGAGACTATCTACTCAAGCGAAGAT 894
Query 886 TCAAAGAAGATTATGTCTGGCTTATACATTGCAGCCAAGAAACACTTGTCTGAAATGCTT 945
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 TCAAAGAAGATAATGTCTGGCTTATATATTGCAGCCAAGAAACACTTGTCTGAAATGCTT 954
Query 946 GCAAATGGAGATATAGATGTGAATTTACCAGACAAGGAAGTGCCAAGAATCCTGGGGAAG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GCAAATGGAGATATAGATGTGAATTTACCAGACAAGGAAGTGCCAAGAATCCTGGGGAAG 1014
Query 1006 ATTCTTTCTCTCCCTGAGTTCTGTTCACCAGCAGACAGTCCTATATTGATCCCGGCACAT 1065
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1015 ATTCTTTCTCTCCCTGAGTTCTGTTCACCAGCAGACAGTCCTAGATTGATCCCGGCACAT 1074
Query 1066 GATTTGGTTTGTAATCTTAGCCCTCTAAGCCAACCAACTGAGAAACCAGAGATTCTGC-- 1123
||||||||| ||| ||| || || || | |||||||| ||||||||||||| |
Sbjct 1075 GATTTGGTTAGTACTCTAAG---TC--AG---A-CAACTGAGCAACCAGAGATTCTACAA 1125
Query 1124 A-A--TG----CAGTTCAGCTACAAATGATCTGACTGATGAAGATTCGGATAAAGACGAC 1176
| | | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1126 ACACCAGAAACCAGTTCAGCTACAAATGATCTGATTGATGAAGATTCGGATAAAGACGAC 1185
Query 1177 AATACATTGTTTACCATTGATGTCTCTGTTCCTAGAGTCTATGAGAATGAAACTGAGAAT 1236
||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1186 GATACATTATTTACCATTGATGTCTCTGTTCCTAGAGACTATGGGAATGAAACTGAGAAT 1245
Query 1237 ATAGACAAGGAAGAGAAGAGTGAGATAGATCCTTTATCTGAAACTTATAGCTCTTCCGTT 1296
|||||||| || ||| |||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1246 ATAGACAATGATGAGGAGAGTGAGATAGATCCATTATCTGAAACTTGTAGCTCTTCCGTT 1305
Query 1297 TCCGGACAAGTCGAAAATGCTGATGAAGATGTAGAAGAGGAAATGTT---CAACCAAGCG 1353
||| || |||||||||||| |||||||||||||||| |||||||||| | ||||||||
Sbjct 1306 TCCCGAGAAGTCGAAAATGTTGATGAAGATGTAGAAAAGGAAATGTTGAACCACCAAGCG 1365
Query 1354 CATTCACCGTCTTCTCCTCCAGAATCTCCACCAACTTCTTCAGTGAGGTTGACTGAATAC 1413
||||| ||| ||||||||| |||||||||| |||||| |||||| ||||||||||||| |
Sbjct 1366 CATTCGCCGGCTTCTCCTCTAGAATCTCCAACAACTTGTTCAGTAAGGTTGACTGAATGC 1425
Query 1414 AAAGAAACTGCCACTGATGCGCAGGGAAAGTTAAGTCCAGTGTCTGTGCTCGAGACTTTG 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 AAAGAAACTGCCACTGATGCGCAGGGAAAGTTAAGTCCAGTGTCTGTGCTCGAGACTTTG 1485
Query 1474 TTCACAGATGATGAAAGTAGCCCAACAACAAGCACAAGTTTCAGTTCAGCTGAAATGCGG 1533
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1486 TTCACAGATGATGACAGTAGCCCAACAACAAGCACAAGTTTCAGTTCAGCTGGAATGCGG 1545
Query 1534 ATGCAACCACTCTGTATAAGATTCGATGAAGTTGGTTCTCCAAAACCAGAGAAAGACAAC 1593
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1546 ATGCAACCACTCTGTATAAGATTCGATGAAGTTGATTCTCCAAAACCAGAGAAGGACAAC 1605
Query 1594 GATGTCGAAGCAAGCATAGATGACAAGGAATTGACACTTGCATACATTGAAGCCGTTGTG 1653
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 AATGTCGAAGCAACCATAGATGACAAGGAATTGACACTTGCATACATTGAAGCCGTTGTG 1665
Query 1654 AAATCTGCATG-CTTAAGCTGGGAAGAGCTTTTAACTAGGCCATTTTACTCGGAACAACT 1712
||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1666 AAATCTGCA-GCCTTGAGCTGGGAAGAGCTTTTAACAAGGCCCTTTTACTCGGAACAGCT 1724
Query 1713 TCTTGAGCTAGAACTAACAGATGACATAGTTTTTTCTTCTACACAGCTCTGCGACGATAA 1772
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1725 TCTTGAGCTAGAACTAACAGATGGCATAGTTTTTTCTTCTACACAGCTCTGCGACGATAA 1784
Query 1773 GAATCTCCTTTACGACTGTATCAATGAAGTTCTTATGGACTTCTGTTGGAATGAATTCAA 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 GAATCTCCTTTACGACTGTATCAATGAAGTTCTTATGGACTTCTGTTGGAATGAATTCAA 1844
Query 1833 TCCCGGGCCTTGGATCTCATTCGTGAAACCTGAGGTCCAGCTAATCTCAGACATGGAAAT 1892
||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1845 TCCCGGGCCTTGGATTTCATTCGTGAAACCTGAGGTCCAGTTGATCTCAGACATGGAAAT 1904
Query 1893 CGCAGCTAAAGTGGCACAAGAAGGAGTTTACTGGCATCTCCTACCTTTGCCTTCCCCTCA 1952
|||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1905 CGCAGCTAAAGTAGCACAAGAAGGAGTTTACTGGCATCTCCAACCTTTGCCTTTCCCTCA 1964
Query 1953 CACTTTAGATCAGATAGTGAAAAAAGACATGGCTAGAACTGGAAGCTGGATGGATCTCCG 2012
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 CACTTTAGATCAGATAGTAAAAAAAGACATGGCTAGAACTGGAAGCTGGATGGATCTCCG 2024
Query 2013 GTTTGAAG-TCGGTTGCCTTGGTTCTTATACAAGTGAAATGATCCTTGATGAGTTAGTAG 2071
||||| || ||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2025 GTTTG-AGATCGGTTGTCTAGGTTCCTATACAAGTGAAATGATCCTTGATGAGTTAGTAG 2083
Query 2072 AAGAGATCATCA-GAAGCTTCAGAGACATGGTTCAAGCTGAACTGATGCAGG-ACCAAAA 2129
|||||||||||| | |||| ||||||||||||||||| ||||| |||||||| ||| |
Sbjct 2084 AAGAGATCATCATG-AGCTGCAGAGACATGGTTCAAGTTGAACCGATGCAGGAACC-CAG 2141
Query 2130 CAGCGACAACCTGTGATGAGGCTCTTTGTTTTAACCTTTTGTCTATCCTGTACAGTTTCA 2189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 CAGCGACAACCTGTGATGAGGCTCTTTGTTTTAACCTTTTGTCTATCCTGTACAGTTTCA 2201
Query 2190 TTGCCACTGCCATGGTCAAATCTCTTGACCTTCTCGTGCAGTGGCACAACCACAGCTTTT 2249
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 2202 TTGCCACTGCCATGGTCAAATCTCTTGACATTCTTGTGCAGTGGCACAACCACAGCTTTT 2261
Query 2250 TATAACATAAACAAAGACTTCAGAATCTCTTACCTTGTTTCTTTCACTCCCATACTCTGT 2309
| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 2262 T-TAACATAAACAAAGACTTCAGAATCTCTTATATTGTTTCTTTCACTTCCATACTCTGT 2320
Query 2310 TTTTGCTTTCCAGTGGCGTCTGTAGTTT-ACTCAGCCAAGAGAGTTTTGCATGAGTTATA 2368
||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||
Sbjct 2321 TTTTGCTTTCCAGTGGCATCTGTAGTTTTACTCGGCCAAGAGAGTTGTGCATGAGTTATA 2380
Query 2369 ACTATAGAGTG-TAATAACAGGAGGCTTGAACTTAAATAAGACAAAGATGATG 2420
||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 2381 ACTATAGAGTGGTA-TAACATGAGGCTTGAACTTAAATAAGACAAAGATGATG 2432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120180104730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5