BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486614
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61410.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1724 0.0
> AT3G61410.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: U-box domain-containing protein kinase family protein
(TAIR:AT2G45910.1); Has 232 Blast hits to 229 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi -
0; Plants - 218; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink). | chr3:22721006-22722673 FORWARD LENGTH=1212
Length=1212
Score = 1724 bits (933), Expect = 0.0
Identities = 1068/1132 (94%), Gaps = 13/1132 (1%)
Strand=Plus/Plus
Query 1 ACAAAACCAAAGCTTCTTGTCTGAAACGAACCAGCCATTCTCAAGATTTTCT-C-AACAA 58
||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||||
Sbjct 1 ACAAAACCAAAGCTTCTTGTCTGAAACGAACCAGCCATTCTAAAGATTTT-TACAAACAA 59
Query 59 CTTTTTCCCCGAGAAACTCTGGACTTTGAGGAAGCGAAAAAGAGCAACATGGAAGAACAA 118
|||||| ||||||||| ||| | ||||||||||||| ||||||||||||||||||| ||
Sbjct 60 CTTTTT-CCCGAGAAAATCTCAAGTTTGAGGAAGCGAGAAAGAGCAACATGGAAGAAAAA 118
Query 119 GAAGAAGCAGGAGTGATGGATGAGAGAATCTACGTTGCACTAGGGAGAGAAACAGCCAAA 178
||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 119 GAAGAAGCAGGAGTGATGGATGAGAGAATATATGTTGCACTAGGGAGAGAAATAGCCAAT 178
Query 179 AACAAGTCAAATCTGGCTTGGGTATTAGATAACTGTGAAGGGAACAAGATCTGTATCGTT 238
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 AACAAGTCAAATCTGGCATGGGTATTAGATAACTGTCAAGGGAACAAGATCTGTATCGTT 238
Query 239 CTTGTTCACCGACCTGCTCAAATGATTCCTATCTTGGGTACCAAATTTGATGCTGCAACG 298
||||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||
Sbjct 239 CTTGTTCACCGACCTCCTCAAATGATTCCTGTCTTGGGTACCAAGTTCGATGCTGCAACG 298
Query 299 GTAGATGAAGAATTAGTGAGAGCATACAGAGAAAAACAAAAGGCGAAAACAGACAAGATT 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 GTAGATGAAGAATTAGTGAGAGCATACAGAGAGAAACAAAAGGCGAAAACAGACAAGATT 358
Query 359 CTTGATGAGTACCTCAGAATTTGCCTGCGGAAAGGGGTCCAAGCGGAGAAGCTGTGCGTT 418
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 359 CTTGATGAGTACCTTAGAATTTGCTTGCGGAAAGGGGTCCAAGCAGAGAAGCTGTGCGTT 418
Query 419 GTGATGAACTCGATCGAGAAAGGAATTGTGCAGATGATTTCTGAGAAAAAAGTGAGGAAA 478
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 419 GAGATGAACTCGATCGAGAAAGGAATTGTGCAGATGATTTCTGAGAACAAAGTCAGGAAG 478
Query 479 TTCATCATGGGAGCAGCTTCAGACAAACATTATTCAACGAAAATGGAGGAATTGAGATCA 538
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 479 TTCATCATGGGAGCAGCTTCAGACAAACATTTTTCAACGAAAATGGAGGATTTGAGATCA 538
Query 539 AAGAAAGCCATCTTCGTCTGCCAACATGCGTCTG-TGACTTGTCATATACGGTTTATCTG 597
|||||||||||||||||||||||||| || |||| | ||||||||||||||||||| |||
Sbjct 539 AAGAAAGCCATCTTCGTCTGCCAACAAGCTTCTGCT-ACTTGTCATATACGGTTTACCTG 597
Query 598 CAAAGGATATCTCATCCATACAAGGGAAGCTAGAATGGATGAAGTCCGAGCTCTCTCAGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAAAGGATATCTCATCCATACAAGGGAAGCTAGAATGGATGAAGTCCGAGCTCTCTCAGC 657
Query 658 TCTACTATCTGACTTTCAGCGGCTTTTCTCCTCACAAAGTAGCACCA-TTTCAGATCAAG 716
|||||||||||||||||| |||||| || |||||||||||||| ||| ||| ||||||||
Sbjct 658 TCTACTATCTGACTTTCAACGGCTTGTCACCTCACAAAGTAGCGCCAATTT-AGATCAAG 716
Query 717 ACAGTAGAGGTTCAAAgaggaaaagcgaggaggaagaggagggggaggaggaggagagAA 776
||||| ||||||||||||||||||| ||| | ||||||| ||| |||||||||||||||
Sbjct 717 ACAGTGGAGGTTCAAAGAGGAAAAGTGAGCATGAAGAGG-GGG--AGGAGGAGGAGAGAA 773
Query 777 CATCACGAACCAGCTCTTCTCGGTCTGCTAGTACACTGTCATACTTTGGAGGATCTGAGG 836
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 774 CATCACGAACCAGCTCTTCTCGGTCTGCTAGTACATTGTCATACTTTGGAGGATCTGAGG 833
Query 837 CTTCGTCAAGCGTTAGTGTAATGGAAGAGAAATCAAACCGTTCATCTCCACCATCTTTAC 896
|||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 834 CTTCCTCAAGTGTAAGTGTAATGGAAGAGATATCAAACCGTTCATCTCCACCATCTTTAC 893
Query 897 CGTGCAGCGGAATGGGGCTGGGCATGATAACCTTCCTGATTAACTCCACCAAACTCTGGC 956
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CGTGCAGCGGAATGGGACTGGGCATGATAACCTTCCTGATTAACTCCACCAAACTCTGGC 953
Query 957 AAAGGCTTGCCATCCAAAACCATAAGCATTGTGAATGACTCCACCATTACCTGAAAAGCT 1016
|||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 954 AAAGGCTTGCAATTCAAAACCATAAGCATTGTGAATGACCCCACCATTACCTGAAAAGCT 1013
Query 1017 ACATAAAGAAGAAGAGGACAAGAACATAAAGCTACAAAGATCTTGATCACATCTGTATAT 1076
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1014 ACATAAAGAAGACGAGGACAAGAACATAAAGCTACAAAGATCTTGATCACATCTGTAAAT 1073
Query 1077 ACAATGTATCTCATATTTGTAAAACCCAATTGT-ATGAGAAGCTGCTTTGAG 1127
|||||||| |||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1074 ACAATGTAGCTCATATTTGTAAA-CCCAATTGTGAGGAGAAGCTGCTTTGAG 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5