BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486615
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61415.1 | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:227227... 2433 0.0
AT2G45950.2 | Symbols: ASK20, SK20 | SKP1-like 20 | chr2:189043... 1020 0.0
> AT3G61415.1 | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:22722710-22726424
REVERSE LENGTH=1576
Length=1576
Score = 2433 bits (1317), Expect = 0.0
Identities = 1498/1582 (95%), Gaps = 25/1582 (2%)
Strand=Plus/Plus
Query 1 TTCTTtctctctcttatccgct-c---ctctctctctct-TTGGTCTGTTTCTGCCGCCG 55
|||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1 TTCTTTCTCTCTCTTATCCGCTCCTGTCTCTCTCTCTCTCTTGGTCTGTTTCTGCCGCCG 60
Query 56 CCGTCGCCGTTATCCTCCGCCAGATTCAAATCTTCCCGCCGCCGTCGACACTCATTGCTT 115
||||||||||||||| |||||||||||||||||| | || || ||| ||||||||||||
Sbjct 61 CCGTCGCCGTTATCCCCCGCCAGATTCAAATCTTTCTTCCACCATCGTCACTCATTGCTT 120
Query 116 CTCCATCCGGTCGTTAGGTA--TGTTACGCTTCCAAGA---AAAATATAACTACTTTTTA 170
|||| |||||||| || ||| || || ||| |||| |||| ||||| ||||||||
Sbjct 121 CTCC-TCCGGTCG-TAAGTATTTGGAAC-CTT-GAAGACTTAAAA-ATAACAACTTTTTA 175
Query 171 TAGTGGG-GACTGTCCTATTTATT-G-GAGCTTGACAGTGTAATAAGATATTAT-CTCAA 226
||||||| | |||||| || |||| | ||||||||||||||||||||||| ||| ||| |
Sbjct 176 TAGTGGGCG-CTGTCCAATATATTGGAGAGCTTGACAGTGTAATAAGATA-TATACTCTA 233
Query 227 CGAGCGTTATACCCGAAGACTGGGTCTACAAATCAATGTCAGAAGGTGAAATGGCCATCA 286
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 234 CAAGCGTTATACCCGAAGACTGGGTCTATAAATCAATGTCAGAAGGTGAAATGGCCATCA 293
Query 287 TTAAACCAGAGATGATGAAATCATATATATGGCTTGAAACTGCTGATGGCTCAATCCAAC 346
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 294 TTAAACCAGAGATGATGAAATCCTATATATGGCTTGAAACTGCTGATGGCTCAATCCAAC 353
Query 347 AAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGG 413
Query 407 GTGTTGGATCTTCTAAGAACTATGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGT 466
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 414 GTGTTGGGTCTTCTAAGAACTACGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGT 473
Query 467 TAAGTCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAAC 526
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TAAGCCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAAC 533
Query 527 GTAAAATTTATGATGAAAAATTCATTCGGATGGATACAAAGAGGCTCTGTGAGTTGACCT 586
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 534 GTAAAGTTTATGATGAAAAATTCATCCGGATGGATACAAAGAGGCTCTGTGAGTTGACCT 593
Query 587 CAGCCGCTGACAGTTTGCAGTTAAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCAC 646
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 594 CAGCCGCTGACAGTTTGCAGTTGAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCAC 653
Query 647 GAATTATTGAGGGGAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACC 706
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAATTATTGAGGGAAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACC 713
Query 707 TTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACACAATGGATGATCCACGGATTCGAT 766
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 714 TTACTGAGGAGGAGAAATTAGAGCCTCTAAAGAACACAATGGATGATCCACGGATTCGAT 773
Query 767 TGTTGAATAGATTGTATGCaaagaaaagaaaggaattgaaagaaagagagaaactaaaga 826
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 774 TGTTGAATAGATTGTATGCAAAGAAAAGAAAAGAATTGAAAGAAAGAGAGAAACTAAAGA 833
Query 827 GTATCGAGGTTGAAGAACATGTCGATGAGCGGTCTGTGGATGACCTATTATCATTTATTA 886
|| ||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 834 GTGTCGAGGTCGAAGAACATGTCGATGAGCGTTCAGTGGATGACCTGTTATCATTTATTA 893
Query 887 ATGGCAGAGATCCCAAGGTAGTAAAGACTTCTAAGAGCAAAAAGAAGAACAAGAAAAGGA 946
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 894 ATGGCAGAGATCCCAAGGTGGTAAAGACTTCCAAGAGCAAAAAGAAGAACAAGAAAAGGA 953
Query 947 AGGAGCATAAAAATGGTACTTCAAATGGAACATGTGAAGCTTCGGAAAAGGATTCGCATA 1006
|||| || || |||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 954 AGGAACAGAAGAATGGTTCTTCAAATGGAACATGTGAAGCTTTGGAAAAGGATTTACATA 1013
Query 1007 ATCTTCATTCCAAATCACAAAGTGCTGAGATTATTGACAAGACTGCGTCCTGCTTGGGAG 1066
||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1014 ATCTTGATTCCAAATCACAAAGTGCTGAGATTGTTGACAATACTGCGTCCTGCTTGGGAG 1073
Query 1067 ATGTATCTAACTTACTTAGTATGGAAGATGACATTTTTACGCCAAAAACTGAGTTTGAAG 1126
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1074 ATGTGTCTAACTTACCTAGTATGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAG 1133
Query 1127 ATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAAATGCTTGATAGAGAGGTAG 1186
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1134 ATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAACTGCTTGATAGAGAGGTAG 1193
Query 1187 AGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC 1253
Query 1247 CTGTGCACTTTTCCATAAATGGCAACGGGACTACAAGGCGATTGACAGGTCCAGCTGCAG 1306
||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 1254 CTGTGAACTTTTCCATAAATGGCAACGGAACTTCAAGACGATTGACAGGTCCAGCTGCAG 1313
Query 1307 GACACAAGTGAAGCTGAAAACGCTAGCCCAATGGCTGGAACAGTTTTGGTGAGATCCCCA 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GACACAAGTGAAGCTGAAAACGCTAGCCCAATGGCTGGAACAGTTTTGGTGAGATCCCCA 1373
Query 1367 CTAGAATGTAAGCAATTAGAGAGA--GTGGTGTTCCGGTCACCGGCGTTTGATGTGTGTC 1424
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1374 CTAGAATGTAAGCAATTAGAGAGAAAGTGGTGTTCCGGTCACCGGCGGTTGATGTGTGTC 1433
Query 1425 CTCCTGTAAttttttttttCTTTCCACAATCTGCTTTCTCTCTTTCTTCTCAGTTAATTC 1484
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1434 ATCCTGTAATTTTTCTTT-CTTTCCACAATCTGCTTTCTCTCTTTCTTCTCAGTTAATCC 1492
Query 1485 GAGAGGTAGGATGCAGttttgttttgttttt-tCTTACTCCTTTTTAGTGATCAACCCTT 1543
||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||
Sbjct 1493 GAGAGGTAGGATGCAGTTTTGTTTTCTTTTTATTTTACTCCTTTTTAGTGATCAACCTTT 1552
Query 1544 TGTATACAACTTTTAATTAAAG 1565
||||||||||||||||||||||
Sbjct 1553 TGTATACAACTTTTAATTAAAG 1574
> AT2G45950.2 | Symbols: ASK20, SK20 | SKP1-like 20 | chr2:18904324-18907814
REVERSE LENGTH=1808
Length=1808
Score = 1020 bits (552), Expect = 0.0
Identities = 878/1033 (85%), Gaps = 32/1033 (3%)
Strand=Plus/Plus
Query 258 ATCAATGTCAGAAGGTGAAATGGCCATCATTAAACCAGAGATGATGAAATCATATATATG 317
|||||||||||||||||| ||||| |||| |||||||||| ||||| || || || ||
Sbjct 397 ATCAATGTCAGAAGGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCTACATCTG 456
Query 318 GCTTGAAACTGCTGATGGCTCAATCCAACAAGTGGAACAAGAGGTTGCAATGTTCTGTCC 377
|||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 457 GCTTCAAACTGCTGATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCC 516
Query 378 CATGATATGTCAAGAAGTAATACAGAAGGGTGTTGGATCTTCTAAGAACT-ATGCAATAT 436
|||||| |||||||| ||||||||||||||||||||||| ||||| || | |||||||||
Sbjct 517 CATGATTTGTCAAGAGGTAATACAGAAGGGTGTTGGATCCTCTAA-AAATCATGCAATAT 575
Query 437 CTCTTCCACAGCGAGTCAATCCAGCCATGTTAAGTC-TGATTTTTGATTACTGCAGATTT 495
| |||||||| ||||| |||||||| ||||| || | ||||| |||||||||||||||||
Sbjct 576 CGCTTCCACAACGAGTTAATCCAGCTATGTTCAG-CTTGATTCTTGATTACTGCAGATTT 634
Query 496 CATCAAGTACCTGGACGTTCAAATAAGGAACGTAAAATTTATGATGAAAAATTCATTCGG 555
|||||| | || |||||||||||||||||||| |||| ||||||||||| |||||| ||
Sbjct 635 CATCAACTGCCAGGACGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTCATCCGA 694
Query 556 ATGGATACAAAGAGGCTCTGTGAGTTGACCTCAGCCGCTGACAGTTTGCAG-TTAAAGCC 614
||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||| ||
Sbjct 695 ATGGACACAAAGAGGCTCTGTGAGTTGACCTCTGCCGCTGACAGTTTGCAGCTGAAA-CC 753
Query 615 GTTGGTTGATCTTACTAGTCGTGCCCTTGCACGAATTATTGAGGGGAAAACCCCTGAGGA 674
|||||||||||||||||||| || |||||| |||| ||||| || |||| |||||||||
Sbjct 754 TTTGGTTGATCTTACTAGTCGCGCACTTGCAAGAATCATTGAAGGAAAAAACCCTGAGGA 813
Query 675 GATACGCGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCT 734
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GATACGAGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCT 873
Query 735 GAAGAACACAATGGATGATCCACGGATTCGATTGTTGAATAGATTGTATGCaaagaaaag 794
||||||| ||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 874 GAAGAACTCAATGGATGATCCACGGATTCGACTACTGAATAGATTATATGCAAAGAAAAG 933
Query 795 aaaggaattgaaagaaagagagaaactaaagaGTATCGAGGTTGAAGAACATGTCGATGA 854
||||||| ||||||||||||||| | | |||| | | |||||||||||||| || || ||
Sbjct 934 AAAGGAACTGAAAGAAAGAGAGAGATTGAAGAATGTTGAGGTTGAAGAACACGTGGACGA 993
Query 855 GCGGTCTGTGGATGACCTATTATCATTTATTAATGGCAGAGATCCCAAGG-TAGTAAAGA 913
|| |||||||||||||| |||||||||||||| |||||||||| ||||| | |||||||
Sbjct 994 ACGTTCTGTGGATGACCTGTTATCATTTATTAACGGCAGAGATCACAAGGCT-GTAAAGA 1052
Query 914 CT-TCTAAGAGCAAAAAGAAGAACAAGAAAAGGAAGGAGCATAAAAATGGTACTTCAAAT 972
| || ||| | ||||||||||| ||||||| |||||| || || | || | ||||||||
Sbjct 1053 -TGTCAAAGGGAAAAAAGAAGAAAAAGAAAAAGAAGGATCAGAAGATTGTTTCTTCAAAT 1111
Query 973 GGAACATGTGAAGCTTCGGAAAAGGATTCGCATAATCTTCATTCCAAATCA-CAAAGTGC 1031
||||| | | | | | ||||| || ||| |||| | ||||||| || ||| |||
Sbjct 1112 --AACAT-TCA---T--G-ACAAGGAATCACATGATCTCCGTTCCAAA-CAACAATGTGT 1161
Query 1032 TGAGATTATTGACAAGACTGCGTCCTGCTTGGGAGATGTATCTAACTTACTTAGTATGGA 1091
||| | || || || |||| || || |||| ||| | |||||||||||| ||
Sbjct 1162 TGA-A-----GA---GATTGGGTCCAGCATGAGAGAGGTACCCAACTTACTTAGTGCAGA 1212
Query 1092 AGATGACATTTTTACGCCAAAAACTGAGTTTGAAGATGGTTATATAGATGATGAAATTGA 1151
||||||||||| ||||||||| | | || |||||||| ||||||| |||||||| ||
Sbjct 1213 AGATGACATTTCTACGCCAAATGCCGGGTCTGAAGATGAAGATATAGACGATGAAATCGA 1272
Query 1152 TCCAGCTTTGAAGGAAATGCTTGATAGAGAGGTAGAGGATTTTGCTCGGAGATTGAACTC 1211
|||||| ||| |||| |||||||||||||||| || |||||||||| ||| |||||||
Sbjct 1273 TCCAGCCATGAGGGAACTGCTTGATAGAGAGGTTGAAGATTTTGCTCAAAGACTGAACTC 1332
Query 1212 TAGTTGGGTTCTATCGATAGGACAAGAAAGGCAG-CCTGTGCACTTTTCCATAAATGGCA 1270
| |||||||| ||| ||||| ||||||| || ||||| ||||| |||||||||||||
Sbjct 1333 CAATTGGGTTCGGTCGCTAGGAAAAGAAAGA-AGGCCTGTACACTTCTCCATAAATGGCA 1391
Query 1271 ACGGGACTACAAG 1283
|||||||||||||
Sbjct 1392 ACGGGACTACAAG 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77258638755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5