BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486615 Length=1565 Score E Sequences producing significant alignments: (Bits) Value AT3G61415.1 | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:227227... 2433 0.0 AT2G45950.2 | Symbols: ASK20, SK20 | SKP1-like 20 | chr2:189043... 1020 0.0 > AT3G61415.1 | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:22722710-22726424 REVERSE LENGTH=1576 Length=1576 Score = 2433 bits (1317), Expect = 0.0 Identities = 1498/1582 (95%), Gaps = 25/1582 (2%) Strand=Plus/Plus Query 1 TTCTTtctctctcttatccgct-c---ctctctctctct-TTGGTCTGTTTCTGCCGCCG 55 |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| Sbjct 1 TTCTTTCTCTCTCTTATCCGCTCCTGTCTCTCTCTCTCTCTTGGTCTGTTTCTGCCGCCG 60 Query 56 CCGTCGCCGTTATCCTCCGCCAGATTCAAATCTTCCCGCCGCCGTCGACACTCATTGCTT 115 ||||||||||||||| |||||||||||||||||| | || || ||| |||||||||||| Sbjct 61 CCGTCGCCGTTATCCCCCGCCAGATTCAAATCTTTCTTCCACCATCGTCACTCATTGCTT 120 Query 116 CTCCATCCGGTCGTTAGGTA--TGTTACGCTTCCAAGA---AAAATATAACTACTTTTTA 170 |||| |||||||| || ||| || || ||| |||| |||| ||||| |||||||| Sbjct 121 CTCC-TCCGGTCG-TAAGTATTTGGAAC-CTT-GAAGACTTAAAA-ATAACAACTTTTTA 175 Query 171 TAGTGGG-GACTGTCCTATTTATT-G-GAGCTTGACAGTGTAATAAGATATTAT-CTCAA 226 ||||||| | |||||| || |||| | ||||||||||||||||||||||| ||| ||| | Sbjct 176 TAGTGGGCG-CTGTCCAATATATTGGAGAGCTTGACAGTGTAATAAGATA-TATACTCTA 233 Query 227 CGAGCGTTATACCCGAAGACTGGGTCTACAAATCAATGTCAGAAGGTGAAATGGCCATCA 286 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 234 CAAGCGTTATACCCGAAGACTGGGTCTATAAATCAATGTCAGAAGGTGAAATGGCCATCA 293 Query 287 TTAAACCAGAGATGATGAAATCATATATATGGCTTGAAACTGCTGATGGCTCAATCCAAC 346 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 294 TTAAACCAGAGATGATGAAATCCTATATATGGCTTGAAACTGCTGATGGCTCAATCCAAC 353 Query 347 AAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGG 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 AAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGG 413 Query 407 GTGTTGGATCTTCTAAGAACTATGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGT 466 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 414 GTGTTGGGTCTTCTAAGAACTACGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGT 473 Query 467 TAAGTCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAAC 526 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 TAAGCCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAAC 533 Query 527 GTAAAATTTATGATGAAAAATTCATTCGGATGGATACAAAGAGGCTCTGTGAGTTGACCT 586 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 534 GTAAAGTTTATGATGAAAAATTCATCCGGATGGATACAAAGAGGCTCTGTGAGTTGACCT 593 Query 587 CAGCCGCTGACAGTTTGCAGTTAAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCAC 646 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 594 CAGCCGCTGACAGTTTGCAGTTGAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCAC 653 Query 647 GAATTATTGAGGGGAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACC 706 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GAATTATTGAGGGAAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACC 713 Query 707 TTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACACAATGGATGATCCACGGATTCGAT 766 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 714 TTACTGAGGAGGAGAAATTAGAGCCTCTAAAGAACACAATGGATGATCCACGGATTCGAT 773 Query 767 TGTTGAATAGATTGTATGCaaagaaaagaaaggaattgaaagaaagagagaaactaaaga 826 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 774 TGTTGAATAGATTGTATGCAAAGAAAAGAAAAGAATTGAAAGAAAGAGAGAAACTAAAGA 833 Query 827 GTATCGAGGTTGAAGAACATGTCGATGAGCGGTCTGTGGATGACCTATTATCATTTATTA 886 || ||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct 834 GTGTCGAGGTCGAAGAACATGTCGATGAGCGTTCAGTGGATGACCTGTTATCATTTATTA 893 Query 887 ATGGCAGAGATCCCAAGGTAGTAAAGACTTCTAAGAGCAAAAAGAAGAACAAGAAAAGGA 946 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 894 ATGGCAGAGATCCCAAGGTGGTAAAGACTTCCAAGAGCAAAAAGAAGAACAAGAAAAGGA 953 Query 947 AGGAGCATAAAAATGGTACTTCAAATGGAACATGTGAAGCTTCGGAAAAGGATTCGCATA 1006 |||| || || |||||| |||||||||||||||||||||||| ||||||||||| |||| Sbjct 954 AGGAACAGAAGAATGGTTCTTCAAATGGAACATGTGAAGCTTTGGAAAAGGATTTACATA 1013 Query 1007 ATCTTCATTCCAAATCACAAAGTGCTGAGATTATTGACAAGACTGCGTCCTGCTTGGGAG 1066 ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 1014 ATCTTGATTCCAAATCACAAAGTGCTGAGATTGTTGACAATACTGCGTCCTGCTTGGGAG 1073 Query 1067 ATGTATCTAACTTACTTAGTATGGAAGATGACATTTTTACGCCAAAAACTGAGTTTGAAG 1126 |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1074 ATGTGTCTAACTTACCTAGTATGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAG 1133 Query 1127 ATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAAATGCTTGATAGAGAGGTAG 1186 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1134 ATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAACTGCTTGATAGAGAGGTAG 1193 Query 1187 AGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC 1246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 AGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC 1253 Query 1247 CTGTGCACTTTTCCATAAATGGCAACGGGACTACAAGGCGATTGACAGGTCCAGCTGCAG 1306 ||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||||| Sbjct 1254 CTGTGAACTTTTCCATAAATGGCAACGGAACTTCAAGACGATTGACAGGTCCAGCTGCAG 1313 Query 1307 GACACAAGTGAAGCTGAAAACGCTAGCCCAATGGCTGGAACAGTTTTGGTGAGATCCCCA 1366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 GACACAAGTGAAGCTGAAAACGCTAGCCCAATGGCTGGAACAGTTTTGGTGAGATCCCCA 1373 Query 1367 CTAGAATGTAAGCAATTAGAGAGA--GTGGTGTTCCGGTCACCGGCGTTTGATGTGTGTC 1424 |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1374 CTAGAATGTAAGCAATTAGAGAGAAAGTGGTGTTCCGGTCACCGGCGGTTGATGTGTGTC 1433 Query 1425 CTCCTGTAAttttttttttCTTTCCACAATCTGCTTTCTCTCTTTCTTCTCAGTTAATTC 1484 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 1434 ATCCTGTAATTTTTCTTT-CTTTCCACAATCTGCTTTCTCTCTTTCTTCTCAGTTAATCC 1492 Query 1485 GAGAGGTAGGATGCAGttttgttttgttttt-tCTTACTCCTTTTTAGTGATCAACCCTT 1543 ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| || Sbjct 1493 GAGAGGTAGGATGCAGTTTTGTTTTCTTTTTATTTTACTCCTTTTTAGTGATCAACCTTT 1552 Query 1544 TGTATACAACTTTTAATTAAAG 1565 |||||||||||||||||||||| Sbjct 1553 TGTATACAACTTTTAATTAAAG 1574 > AT2G45950.2 | Symbols: ASK20, SK20 | SKP1-like 20 | chr2:18904324-18907814 REVERSE LENGTH=1808 Length=1808 Score = 1020 bits (552), Expect = 0.0 Identities = 878/1033 (85%), Gaps = 32/1033 (3%) Strand=Plus/Plus Query 258 ATCAATGTCAGAAGGTGAAATGGCCATCATTAAACCAGAGATGATGAAATCATATATATG 317 |||||||||||||||||| ||||| |||| |||||||||| ||||| || || || || Sbjct 397 ATCAATGTCAGAAGGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCTACATCTG 456 Query 318 GCTTGAAACTGCTGATGGCTCAATCCAACAAGTGGAACAAGAGGTTGCAATGTTCTGTCC 377 |||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 457 GCTTCAAACTGCTGATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCC 516 Query 378 CATGATATGTCAAGAAGTAATACAGAAGGGTGTTGGATCTTCTAAGAACT-ATGCAATAT 436 |||||| |||||||| ||||||||||||||||||||||| ||||| || | ||||||||| Sbjct 517 CATGATTTGTCAAGAGGTAATACAGAAGGGTGTTGGATCCTCTAA-AAATCATGCAATAT 575 Query 437 CTCTTCCACAGCGAGTCAATCCAGCCATGTTAAGTC-TGATTTTTGATTACTGCAGATTT 495 | |||||||| ||||| |||||||| ||||| || | ||||| ||||||||||||||||| Sbjct 576 CGCTTCCACAACGAGTTAATCCAGCTATGTTCAG-CTTGATTCTTGATTACTGCAGATTT 634 Query 496 CATCAAGTACCTGGACGTTCAAATAAGGAACGTAAAATTTATGATGAAAAATTCATTCGG 555 |||||| | || |||||||||||||||||||| |||| ||||||||||| |||||| || Sbjct 635 CATCAACTGCCAGGACGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTCATCCGA 694 Query 556 ATGGATACAAAGAGGCTCTGTGAGTTGACCTCAGCCGCTGACAGTTTGCAG-TTAAAGCC 614 ||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||| || Sbjct 695 ATGGACACAAAGAGGCTCTGTGAGTTGACCTCTGCCGCTGACAGTTTGCAGCTGAAA-CC 753 Query 615 GTTGGTTGATCTTACTAGTCGTGCCCTTGCACGAATTATTGAGGGGAAAACCCCTGAGGA 674 |||||||||||||||||||| || |||||| |||| ||||| || |||| ||||||||| Sbjct 754 TTTGGTTGATCTTACTAGTCGCGCACTTGCAAGAATCATTGAAGGAAAAAACCCTGAGGA 813 Query 675 GATACGCGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCT 734 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 814 GATACGAGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCT 873 Query 735 GAAGAACACAATGGATGATCCACGGATTCGATTGTTGAATAGATTGTATGCaaagaaaag 794 ||||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||| Sbjct 874 GAAGAACTCAATGGATGATCCACGGATTCGACTACTGAATAGATTATATGCAAAGAAAAG 933 Query 795 aaaggaattgaaagaaagagagaaactaaagaGTATCGAGGTTGAAGAACATGTCGATGA 854 ||||||| ||||||||||||||| | | |||| | | |||||||||||||| || || || Sbjct 934 AAAGGAACTGAAAGAAAGAGAGAGATTGAAGAATGTTGAGGTTGAAGAACACGTGGACGA 993 Query 855 GCGGTCTGTGGATGACCTATTATCATTTATTAATGGCAGAGATCCCAAGG-TAGTAAAGA 913 || |||||||||||||| |||||||||||||| |||||||||| ||||| | ||||||| Sbjct 994 ACGTTCTGTGGATGACCTGTTATCATTTATTAACGGCAGAGATCACAAGGCT-GTAAAGA 1052 Query 914 CT-TCTAAGAGCAAAAAGAAGAACAAGAAAAGGAAGGAGCATAAAAATGGTACTTCAAAT 972 | || ||| | ||||||||||| ||||||| |||||| || || | || | |||||||| Sbjct 1053 -TGTCAAAGGGAAAAAAGAAGAAAAAGAAAAAGAAGGATCAGAAGATTGTTTCTTCAAAT 1111 Query 973 GGAACATGTGAAGCTTCGGAAAAGGATTCGCATAATCTTCATTCCAAATCA-CAAAGTGC 1031 ||||| | | | | | ||||| || ||| |||| | ||||||| || ||| ||| Sbjct 1112 --AACAT-TCA---T--G-ACAAGGAATCACATGATCTCCGTTCCAAA-CAACAATGTGT 1161 Query 1032 TGAGATTATTGACAAGACTGCGTCCTGCTTGGGAGATGTATCTAACTTACTTAGTATGGA 1091 ||| | || || || |||| || || |||| ||| | |||||||||||| || Sbjct 1162 TGA-A-----GA---GATTGGGTCCAGCATGAGAGAGGTACCCAACTTACTTAGTGCAGA 1212 Query 1092 AGATGACATTTTTACGCCAAAAACTGAGTTTGAAGATGGTTATATAGATGATGAAATTGA 1151 ||||||||||| ||||||||| | | || |||||||| ||||||| |||||||| || Sbjct 1213 AGATGACATTTCTACGCCAAATGCCGGGTCTGAAGATGAAGATATAGACGATGAAATCGA 1272 Query 1152 TCCAGCTTTGAAGGAAATGCTTGATAGAGAGGTAGAGGATTTTGCTCGGAGATTGAACTC 1211 |||||| ||| |||| |||||||||||||||| || |||||||||| ||| ||||||| Sbjct 1273 TCCAGCCATGAGGGAACTGCTTGATAGAGAGGTTGAAGATTTTGCTCAAAGACTGAACTC 1332 Query 1212 TAGTTGGGTTCTATCGATAGGACAAGAAAGGCAG-CCTGTGCACTTTTCCATAAATGGCA 1270 | |||||||| ||| ||||| ||||||| || ||||| ||||| ||||||||||||| Sbjct 1333 CAATTGGGTTCGGTCGCTAGGAAAAGAAAGA-AGGCCTGTACACTTCTCCATAAATGGCA 1391 Query 1271 ACGGGACTACAAG 1283 ||||||||||||| Sbjct 1392 ACGGGACTACAAG 1404 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77258638755 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5