BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486617
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61420.1 | Symbols: | BSD domain (BTF2-like transcription f... 2025 0.0
AT1G55750.1 | Symbols: | BSD domain (BTF2-like transcription f... 1602 0.0
> AT3G61420.1 | Symbols: | BSD domain (BTF2-like transcription
factors, Synapse-associated proteins and DOS2-like proteins)
| chr3:22727040-22731954 REVERSE LENGTH=2129
Length=2129
Score = 2025 bits (1096), Expect = 0.0
Identities = 1312/1409 (93%), Gaps = 43/1409 (3%)
Strand=Plus/Plus
Query 1 ATGTTGCTTTTTGTCCCAAATGATCCTAAATCAGATTTGAAGCTTAAAGTTCAGACTCAC 60
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 ATGCTGCTCTTTGTCCCAAATGATCCTAAATCAGATTTGAAGCTTAAAGTTCAGACTCAC 329
Query 61 AACATCAAAAGTCAGAAATATACCAAACAAGGATCAAATAAACCTCCTTGGCTCAATCTG 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 330 AACATCAAAAGTCAGAAATATACCAAAGAAGGATCAAATAAACCTCCTTGGCTCAATCTG 389
Query 121 ACCAATAAGCAGGGAAGGAGTCATATCTTTGAGTTTGAAAATTATCCCGACATGCATGCT 180
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 390 ACCAGCAAGCAGGGAAGGAGTCATATCTTTGAGTTTGAAAATTATCCTGACATGCATGCT 449
Query 181 TGTCGAGATTTCATCACTAAGGCCCTTGCTAAATGTGATGAGGAGTCTAATAAA-TCAGT 239
||||| |||||||||||||||||||||||||||||||| |||||| |||||||| | |||
Sbjct 450 TGTCGTGATTTCATCACTAAGGCCCTTGCTAAATGTGAAGAGGAGCCTAATAAACT-AGT 508
Query 240 TGTCTCT-ACACCTGCTGAGCAACTTAGTATGGCAGAATTTGAGCTACGCTTCAAGCTTC 298
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TGTCT-TGACACCTGCTGAACAACTTAGTATGGCAGAATTTGAGCTACGCTTCAAGCTTC 567
Query 299 TTCGAGAAAATAGTGAGTTGCAGAAATTGCATAAGCAATTTGTGGAAAGTAAAGTCCTGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TTCGAGAAAATAGTGAGTTGCAGAAATTGCATAAGCAATTTGTGGAAAGTAAAGTCCTGA 627
Query 359 CGGAAGACGAATTCTGGTCTACAAGGAAGAAATTACTTGGTAAATATTCCATTAGAAAGT 418
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 628 CGGAAGACGAATTCTGGTCTACGAGGAAGAAATTACTTGGTAAAGATTCCATTAGAAAGT 687
Query 419 CAAAACAACAGATGGGGCTTAAAGGCATGATGGTTTCAGGCATCAAACCATCTTCTGATG 478
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 688 CAAAACAACAGATGGGGCTCAAAAGCATGATGGTTTCAGGCATCAAACCGTCTACTGATG 747
Query 479 GGCGGACTAATCGGGTGACGTTTACCTTAACGTCTGAGATAATTTTTCAGATTTTTGCTG 538
| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 748 GCCGGACTAATAGGGTGACGTTTAACTTAACGTCTGAGATAATTTTTCAGATTTTTGCTG 807
Query 539 AGAAGCCGGCTGTCCGGCAGGCATTCATAGATTATGTTCCGAAAAAGATGACAGAAAAGG 598
||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 808 AGAAGCCGGCTGTTCGCCAGGCATTCATAAATTATGTTCCGAAAAAGATGACAGAAAAGG 867
Query 599 ACTTCTGGACAAAATATTTTAGAGCAGAATATCTTTACAGCACAAAAAATACAGCAG-A- 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 868 ACTTTTGGACAAAATATTTTAGAGCAGAATATCTTTACAGCACAAAAAATACAGCAGTAG 927
Query 657 ----AGC------TGCTGAGGATGAGGAACTCGCTGTCTTTCTGAAGCCTGACGAGATAT 706
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CTGCAGCAGAAGCTGCTGAGGATGAGGAACTCGCTGTCTTTCTGAAGCCTGACGAGATAT 987
Query 707 TGGCTCGGGAAGCTCGTCAAAAGATGAGACGGGTTGATCCAACTCTTGACATGGACGCTG 766
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TGGCTCAGGAAGCTCGTCAAAAGATGAGACGGGTTGATCCAACTCTTGACATGGACGCTG 1047
Query 767 ACCAGGGAGATGACTACACTCATCTTATGGACCATGGGATCCAGCGCGATGGCACCAATG 826
|| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1048 ACGAGGGAGATGACTACACCCATCTTATGGACCACGGGATCCAGCGCGATGGCACCAATG 1107
Query 827 ACGCTGTTGAACCACAGAATGACCAGCATAGGAGGTCACTTTTACAAGATCTTAATCGCC 886
|| | ||||||||||||||||||||| || ||||||||||||||||||||||||||| |
Sbjct 1108 ACATTATTGAACCACAGAATGACCAGCTTAAGAGGTCACTTTTACAAGATCTTAATCGTC 1167
Query 887 ATGCTGCTGTTGTATTGGAAGGAAGATGCATCGTAGATGTTGAGTCAGAAGAGACGAGGA 946
|||||||||||||||||||||||||||||||| | ||||| |||| ||||| ||||| |
Sbjct 1168 ATGCTGCTGTTGTATTGGAAGGAAGATGCATC--A-ATGTTCAGTCTGAAGATACGAGAA 1224
Query 947 TTGTTGCAGAGGCTCTCACACGGGCGAAACAAGTAAGCAAAGCT-A-----A---C-C-A 995
|||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 1225 TTGTTGCAGAGGCTCTCACACGGGCGAAACAAGTAAGCAAAGCTGATGGTGAAATCACCA 1284
Query 996 -GGA-G--A----GG-----TTGGAGAGAATGTCCCGTGCAGCAGAGATGGAGGATCTTC 1042
||| | | || ||||||||||||||||||||| |||| |||||||||||||
Sbjct 1285 AGGACGCTAATCAGGAGAGGTTGGAGAGAATGTCCCGTGCAACAGAAATGGAGGATCTTC 1344
Query 1043 AAGCACCACAAAACTTCCCACTAGCCCCCCTCTCTATCAAGGACCCTCGTGATTACTTTG 1102
|||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 1345 AAGCACCACAAAACTTCCCATTAGCACCACTCTCTATCAAGGACCCTCGTGATTACTTTG 1404
Query 1103 AATCTCAACAAGGAAACGTCCTCAGTGAACCCAGAGGAGCAAGGGCATCAAAGAGAAATG 1162
||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 1405 AATCTCAACAAGGAAACATCCTCAGTGAACCCAGAGGAGCAAAGGCGTCAAAAAGAAATG 1464
Query 1163 TATATGAAGCTTATGGATTACTAAAAGAATCCATTTTGGAGATTAGAATGACGGGATTAA 1222
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1465 TCCATGAAGCTTATGGATTACTAAAAGAATCCATTTTGGTGATTAGAATGACGGGATTAA 1524
Query 1223 GTGATCCGTTGGTTAAACCTGAAGTTTCCTTTGAGGTTTTCAGTTCGTTGACCCGAACTA 1282
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GTGATCCGTTGATTAAACCTGAAGTTTCCTTTGAGGTTTTCAGTTCGTTGACCCGAACTA 1584
Query 1283 TCTCAACTGCCAAAAATATTATCGGGAAGAACCCACGGGAGAGCTTTCTGGACAGATTAC 1342
|||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 1585 TCTCAACTGCCAAAAATATTCTCGGGAAGAACCCGCAAGAGAGCTTTCTGGACAGATTAC 1644
Query 1343 CAAAGTCCACTAAGGATGAAGTTATACAT 1371
|||||||||||||||||||||||||||||
Sbjct 1645 CAAAGTCCACTAAGGATGAAGTTATACAT 1673
Score = 226 bits (122), Expect = 5e-58
Identities = 130/134 (97%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 1450 GCAATGAAACAGTCGGTGCAGTCTGATCTCCGGCATCAGGTTTCGTTACTAGTTCGTTCA 1509
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 1800 GCAATGAAACAGTCGGTGCAGTCTGATCTCCGGCATCAAGTTTCCTTACTAGTTCGTCCA 1859
Query 1510 ATGCAACAGGCTCTTGATGCTGCGTTCCAACACTACGAATCGGACTTGCAGAGAAGAACC 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 ATGCAACAGGCTCTTGATGCTGCGTTCCAACACTACGAATCGGACTTGCAGAGAAGAACC 1919
Query 1570 GCTAAGATTGCATA 1583
||||||||| ||||
Sbjct 1920 GCTAAGATTACATA 1933
> AT1G55750.1 | Symbols: | BSD domain (BTF2-like transcription
factors, Synapse-associated proteins and DOS2-like proteins)
| chr1:20840195-20845182 REVERSE LENGTH=2077
Length=2077
Score = 1602 bits (867), Expect = 0.0
Identities = 1246/1419 (88%), Gaps = 65/1419 (5%)
Strand=Plus/Plus
Query 1 ATGTTGCTTTTTGTCCCAAATGATCCTAAATCAGATT-TGAAGCTTAAAGTTCAGACTCA 59
|||||||| || ||||| |||||||| |||||||||| | ||||| ||||| | |||||
Sbjct 138 ATGTTGCTCTTCGTCCCTAATGATCCCAAATCAGATTCT-AAGCTCAAAGTACTTACTCA 196
Query 60 CAACATCAAAAGTCAGAAATATACCAAACAAGGATCAAATAAACCTCCTTGGCTCAATCT 119
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 197 GAACATCAAAAGTCAAAAATATACCAAAGAAGGATCAAATAAACCTCCTTGGCTCAATCT 256
Query 120 GACCAATAAGCAGGGAAGGAGTCATATCTTTGAGTTTGAAAATTATCCCGACATGCATGC 179
||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CACCAACAAGCAGGCAAAGAGTCATATCTTTGAGTTTGAAAATTATCCCGACATGCATGC 316
Query 180 TTGTCGAGATTTCATCACTAAGGCCCTTGCTAAATGTGA-TGAGGAGTCTAATAAATCAG 238
||| || |||||||||||||||||||||||||||||||| | |||| |||||||||| |
Sbjct 317 TTGCCGTGATTTCATCACTAAGGCCCTTGCTAAATGTGAATT-GGAGCCTAATAAATCCG 375
Query 239 TTGTCTCTACACCTGCTGAGCAACTTAGTATGGCAG-AATTTGAGCTACGCTTCAAGCTT 297
||||||| ||| || | |||||||| ||||| || |||| ||||| ||||||||||||
Sbjct 376 TTGTCTCGACATCTTCCGAGCAACTCAGTATTA-AGGAATTGGAGCTGCGCTTCAAGCTT 434
Query 298 CTTCGAGAAAATAGTGAGTTGCAGAAATTGCATAAGCAATTTGTGGAAAGTAAAGTCCTG 357
|| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 435 CTGAGAGAAAATAGTGAGCTGCAGAGATTGCATAAGCAATTTGTGGAAAGTAAAGTACTG 494
Query 358 ACGGAAGACGAATTCTGGTCTACAAGGAAGAAATTACTTGGTAAATATTCCATTAGAAAG 417
|| ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 495 ACTGAAGATGAATTCTGGGCTACAAGAAAGAAATTACTTGGTAAAGATTCCATCAGAAAG 554
Query 418 TCAAAACAACAGATGGGGCTTAA-AGGCATGATGGTTTCAGGCATCAAACCATCTTCTGA 476
|||||||| ||| | |||||||| || |||||||||||| ||||||||||||||| ||||
Sbjct 555 TCAAAACAGCAGCTCGGGCTTAAGAG-CATGATGGTTTCTGGCATCAAACCATCTACTGA 613
Query 477 TGGGCGGACTAATCGGGTGACGTTTACCTTAACGTCTGAGATAATTTTTCAGATTTTTGC 536
||||||||||||| | |||||||||| ||| || |||||||||||||||||||||||||
Sbjct 614 TGGGCGGACTAATAGAGTGACGTTTAACTTGACACCTGAGATAATTTTTCAGATTTTTGC 673
Query 537 TGAGAAGCCGGCTGTCCGGCAGGCATTCAT-AGATTATGTTCCGAAAAAGATGACAGAAA 595
||||||||| ||||| |||||||||||||| | |||||||||||| |||||||||||||
Sbjct 674 TGAGAAGCCAGCTGTTCGGCAGGCATTCATCA-ATTATGTTCCGAGTAAGATGACAGAAA 732
Query 596 AGGACTTCTGGACAAAATATTTTAGAGCAGAATATCTTTACAGCAC-AAAAA-A------ 647
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 733 AAGACTTCTGGACAAAATATTTTAGAGCAGAATATCTTTACAGCACCAAAAATACAGCAG 792
Query 648 TA-C---AGCAGAAGCTGCTGAGGATGAGGAACTCGCTGTCTTTCTGAAGCCTGACGAGA 703
|| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 793 TAGCTGCAGCAGAAGCTGCTGAGGACGAGGAACTCGCTGTCTTTCTGAAGCCTGATGAGA 852
Query 704 TATTGGCTCGGGAAGCTCGTCAAAAGATGAGACGGGTTGATCCAACTCTTGACATGGACG 763
|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 853 TATTGGCTCGGGAAACTCGTCACAAGATTAGACGGGTTGATCCAACTCTTGACATGGAGG 912
Query 764 CTGACCAGGGAGATGACTACACTCATCTTATGGACCATGGGATCCAGCGCGATGGCACCA 823
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 913 CTGACCAGGGAGACGACTACACTCATCTTATGGACCACGGGATCCAGCGTGATGGCACCA 972
Query 824 ATG-ACGCTGTTGAACCACAGAATGACCAGCATAGGAGG-TCACTTTTACAAGATCTTAA 881
|| | | |||||||||||| ||||| ||| || | | |||||||| |||||||||||
Sbjct 973 -TGGATGTTGTTGAACCACAAAATGATCAGTTTAA-ACGATCACTTTTGCAAGATCTTAA 1030
Query 882 TCGCCATGCTGCTGTTGTATTGGAAGGAAGATGCATCGTAGATGTTGAGTCAGAAGAGAC 941
||| ||||||||||||||||||||||| ||| |||| | ||||||||||||||||| ||
Sbjct 1031 TCGTCATGCTGCTGTTGTATTGGAAGGCAGAAGCAT--T-GATGTTGAGTCAGAAGATAC 1087
Query 942 GAGGATTGTTGCAGAGGCTCTCACACGGGCGAAACAAGTAAGCAAAGCT-A-----A--C 993
|||||||||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 1088 AAGGATTGTTGCAGAGGCTCTCACACGGGTTAAACAAGTAAGCAAAGCTGATGGTGAAAC 1147
Query 994 CA----GGA-G--A----GG-----TTGGAGAGAATGTCCCGTGCAGCAGAGA-TGGAGG 1036
|| ||| | | || ||||| ||||||||||| | ||||| || ||||||
Sbjct 1148 CACCAAGGACGCTAATCAGGAGAGATTGGAAAGAATGTCCCGGGTAGCAG-GAATGGAGG 1206
Query 1037 ATCTTCAAGCACCACAAAACTTCCCACTAGCCCCCCTCTCTATCAAGGACCCTCGTGATT 1096
||||||||||||||||||| |||||| | || || || ||||||||||| ||||||||||
Sbjct 1207 ATCTTCAAGCACCACAAAATTTCCCATTGGCGCCGCTTTCTATCAAGGATCCTCGTGATT 1266
Query 1097 ACTTTGAATCTCAACAAGGAAACGTCCTCAGTGAACCCAGAGGAGCAA-GGGCATCAAAG 1155
|||||||||||||||||||||||||||||| || |||||||||||||| |||| | || |
Sbjct 1267 ACTTTGAATCTCAACAAGGAAACGTCCTCAATGTACCCAGAGGAGCAAAGGGCTTGAA-G 1325
Query 1156 AGAAATGTATATGAAGCTTATGGATTACTAAAAGAATCCATTTTGGAGATTAGAA-TGAC 1214
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||| | ||
Sbjct 1326 AGAAATGTCCATGAAGCTTATGGATTACTAAAGGAATCCATTTTAGAGATTAGAGCT-AC 1384
Query 1215 GGGATTAAGTGATCCGTTGGTTAAACCTGAAGTTTCCTTT-GAGGTTTTCAGTTCGTTGA 1273
|||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||| |
Sbjct 1385 AGGATTAAGTGATCCGTTGATTAAGCCTGAAGTTTC-TTTCGAGGTTTTCAGTTCGTTAA 1443
Query 1274 CCCGAACTATCT-CAACTGCCAAAAATATTA-TCGGGAAGAACCCACGGGAGAGCTTTCT 1331
||||||| || | ||||||| |||||||||| | |||||||||||||| |||||||||||
Sbjct 1444 CCCGAACCAT-TGCAACTGCTAAAAATATTAAT-GGGAAGAACCCACGAGAGAGCTTTCT 1501
Query 1332 GGACAGATTACCAAAGTCCACTAAGGATGAAGTTATACA 1370
|||||||||||||||||||||||||||||||||| ||||
Sbjct 1502 GGACAGATTACCAAAGTCCACTAAGGATGAAGTTCTACA 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5