BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486623
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61460.1 | Symbols: BRH1 | brassinosteroid-responsive RING-H... 1057 0.0
> AT3G61460.1 | Symbols: BRH1 | brassinosteroid-responsive RING-H2
| chr3:22741511-22742284 REVERSE LENGTH=774
Length=774
Score = 1057 bits (572), Expect = 0.0
Identities = 670/713 (94%), Gaps = 23/713 (3%)
Strand=Plus/Plus
Query 1 CTCTCTAAAAACCCTAACTTTCTCCATGGGCTTTCCCGTAGGTTACACAGAGGTTTTCTT 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 CTCTCTAAAAACCCTAGCTTTCTCCATGGGCTTTCCCGTAGGTTACACAGAGGTTTTCTT 106
Query 61 ACCGAAGCTTTTCGTACAAACACTTTCGATTCTTGGTTTCATCAGAACCATCGTCTTCTC 120
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 107 ACCGAAGCTTTTCGTACAAACGCTTTCGATTCTCGGATTCATCAGAACCATCGTCTTCTC 166
Query 121 TATCTTCCGCTTCTTGGGTCTCTCAGATTTTCTCGAAATGGATCAAACCTGGCCCGACTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 167 TATCTTCCGCTTCTTGGGTCTCTCAGATTTTCTCGAAATGGATCAAACCTGGCCCGATTA 226
Query 181 CACATCGTACCCGACCCGAATACCCGAAACCCGCTCACCCTTCTCCGCACTCCTAATCAG 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 227 CACATCGTACCCGACCCGAATACCCGAAACCCGCTCACCTTTCTCCGCACTCCTAATTAG 286
Query 241 AGAGATCTTACCGGTTATCAAATTCGAAGAGTTAACGAATTCCGGCGAAGATCTACCGGA 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 AGAGATCCTACCGGTTATCAAATTCGAAGAGTTAACGAATTCCGGCGAAGATCTACCGGA 346
Query 301 AAACTGCGCCGTTTGTTTATACGAATTCGAAGGAGAGCAAGAGATCCGGTGGCTGAGAAA 360
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 347 AAACTGCGCCGTTTGTCTATACGAATTCGAAGGAGAACAAGAGATCCGGTGGCTGAGAAA 406
Query 361 TTGCAGACATATATTTCACCGGAGCTGTCTTGACCGTTGGATGGATCATGATCAGAAGAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TTGCAGACATATATTTCACCGGAGCTGTCTTGACCGTTGGATGGATCATGATCAGAAGAC 466
Query 421 GTGTCCACTTTGTAGAACACCGTTTGTTCCAGATGAGATGCAAGAAGAGTTTAATCAACG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GTGTCCACTTTGTAGAACACCGTTTGTTCCAGATGAGATGCAAGAAGAGTTTAATCAACG 526
Query 481 GCTATGGGCTGCTTCTGGTGTTCATGATTTTCACTGTCCCGTGACCGAATTATTATAGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GCTATGGGCTGCTTCTGGTGTTCATGATTTTCACTGTCCCGTGACCGAATTATTATAGAA 586
Query 541 GAA-------tttt-t-t--------gtgtcccttgtgttcttttttttgttttgacttt 583
||| |||| | | ||||||||| ||||||||||| |||||||||||
Sbjct 587 GAAGCCACGCTTTTCTATCTTTTTCTGTGTCCCTTATGTTCTTTTTT--GTTTTGACTTT 644
Query 584 tcacccctgtacttttgattttactttttCCACCCC-CTTACTGACAATTAGATTTGCCA 642
||||||| |||||||||| || |||||| |||||| |||||||||| ||||| ||||||
Sbjct 645 -CACCCCTCTACTTTTGATGTTGCTTTTTTCACCCCTCTTACTGACATTTAGACTTGCCA 703
Query 643 CGCTTTTATGTGTGTATATTTTG-T-ACATATGAATGAGAGATGAGCAATAAA 693
||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 704 CGCTTTTATGTGTGTATATACTCCTTACATATGAATGAGAGATGAGCAATAAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5