BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486624
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting c... 1629 0.0
AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protei... 562 2e-159
> AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745653-22747282 FORWARD LENGTH=1107
Length=1107
Score = 1629 bits (882), Expect = 0.0
Identities = 983/1029 (96%), Gaps = 18/1029 (2%)
Strand=Plus/Plus
Query 1 CTTTTATAGATTACAC-A-TCA--TTC-CTTCGTTCTTCTTCTAACACACTTTGAGTCTT 55
|||||||||||||||| | || ||| ||| |||||||||||||||||| ||||||||
Sbjct 1 CTTTTATAGATTACACAACACACGTTCGTTTCTTTCTTCTTCTAACACACTCTGAGTCTT 60
Query 56 GAAGGTCAACAACGTCGAGAAAAATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTG 115
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGGTCAACAACGTCGAGAATAATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTG 120
Query 116 CCATTTCTTCTCCAAGTTTCTTGGGTGGGAAGAAACTGAGGCTGAAGAAGAAGTTGACTG 175
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CCATTTCTTCTCCAAGTTTCTTGGGTGGTAAGAAACTGAGGCTGAAGAAGAAGTTGACTG 180
Query 176 TTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGAC 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGAC 240
Query 236 CGATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTCGACGGTAGCCTCCCCGGTGACT 295
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 241 CAATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTAGACGGTAGCCTCCCTGGTGACT 300
Query 296 TCGGATTTGATCCCCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAG 355
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGGATTTGATCCTCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAG 360
Query 356 CAGAGCTAGTCCACTGCCGGTGGGCGATGCTAGGAGCCGCCGGGATATTCATCCCGGAGT 415
| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 361 CCGAGATAGTCCACTGCCGATGGGCTATGCTAGGAGCCGCCGGGATATTCATCCCAGAGT 420
Query 416 TCCTAACGAAGATTGGAATCCTCAACACTCCATCGTGGTACACGGCGGGAGAGCAAGAGT 475
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 421 TCCTAACGAAGATCGGAATCCTCAACACTCCGTCATGGTACACGGCGGGAGAGCAAGAGT 480
Query 476 ATTTCACGGACAAAACCACACTCTTCGTCGTTGAGCTCATCTTGATCGGATGGGCCGAAG 535
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 481 ATTTCACGGACAAAACCACACTCTTTGTCGTTGAGCTCATTTTGATCGGATGGGCAGAAG 540
Query 536 GACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAA 600
Query 596 ACAACAAACTGACGGGCACAGACGTTGGTTACCCGGGTGGGTTATGGTTCGACCCGTTGG 655
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 ACAACAAACTGACGGGCACAGACGTTGGTTACCCAGGTGGGTTATGGTTCGACCCGTTGG 660
Query 656 GTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACG 720
Query 716 GAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTG 780
Query 776 GTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTG 840
Query 836 CTTTCACACCCAAGTGAGACGA-GAAAAAAGGGTTATGGGGAGGAGGAGAATGCGTTTGT 894
|||||||||||||||||||| | |||||| |||||||||||||| | | | |||||||||
Sbjct 841 CTTTCACACCCAAGTGAGACAACGAAAAA-GGGTTATGGGGAGGTG-A-A-TGCGTTTGT 896
Query 895 GTG--ATCATGTTTGTACAAATATCGTTTTGAACTTAAAAATATTTATGTA-TTTATATA 951
||| |||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||
Sbjct 897 GTGTGATCATGTTTGTACAAATATCATTTTGAACTTAAAATTATT-ATGTACTTTATATA 955
Query 952 AATTGTGGTCGAATGCAAATTA-GGATTCACCTTAACACTCTCTTTTCCTAACTCAATGA 1010
|||||||||||||||||||||| || ||| || ||||||||| ||| |||||||||||||
Sbjct 956 AATTGTGGTCGAATGCAAATTAAGG-TTCCCCGTAACACTCT-TTT-CCTAACTCAATGA 1012
Query 1011 TCATAAGAT 1019
|||||||||
Sbjct 1013 TCATAAGAT 1021
> AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein
| chr5:10372938-10374190 REVERSE LENGTH=562
Length=562
Score = 562 bits (304), Expect = 2e-159
Identities = 335/349 (96%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 548 CCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAAACAACAAACTGA 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAAACAACAAACTGA 277
Query 608 CGGGCACAGACGTTGGTTACCCGGGTGGGTTATGGTTCGACCCGTTGGGTTGGGGATCCG 667
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 278 CGGGCACAGACATTGGTTACCCAGGTGGGTTATGGTTCGACCCGTTGGGTTGGGGATCCG 337
Query 668 GTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACGGAAGGTTGGCTA 727
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 338 GTAGCCCAACTAAGATCAAGGAGTTGAGGACCAAGGAGATCAAGAACGGAAGGTTGGCGA 397
Query 728 TGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTGGTCCTATTGATA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTGGTCCTATTGATA 457
Query 788 ACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTGCTTTCACACCCA 847
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 458 ACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACCATCTTCGCTGCTTTCACACCCA 517
Query 848 AGTGAGACGA-GAAAAAAGGGTTATGGGGAGGAGGAGAATGCGTTTGTG 895
|||||||| | |||||| |||||||||||||| | | | ||||||||||
Sbjct 518 AGTGAGACAACGAAAAA-GGGTTATGGGGAGGTG-A-A-TGCGTTTGTG 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5