BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486630
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61490.1 | Symbols: | Pectin lyase-like superfamily protein... 2527 0.0
> AT3G61490.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:22758063-22760192 FORWARD LENGTH=1547
Length=1547
Score = 2527 bits (1368), Expect = 0.0
Identities = 1458/1502 (97%), Gaps = 3/1502 (0%)
Strand=Plus/Plus
Query 1 TCATCAAACCATTTAGCCTCCCCACATTCACAAAGGGCTCACAAGTCACAAATACAAAAC 60
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 TCATCAAACCATTTAGCCTCTCCACACTCACAAAGGGCTCACAAGTCTCAAATACAAAAC 60
Query 61 CATGAAGAACATACTCGCTTGCATAGTTACCATCATAACCCTCTCAAACCTCATAACCAC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGAAGAACATACTAGCTTGCATAGTTACCATCATAACCCTCTCAAACCTCATAACCAT 120
Query 121 TTCTCAAGGAAGAAGGGTATTACAGTCATTTGAGACATTCGAGTACACAGCAATTACTTG 180
|||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||
Sbjct 121 TTCTCAAGGAAGAAGGGTATCACAGTCATTTGAAACATTTGAGTACACAGCAATTATTTG 180
Query 181 CAGATCACATAGTGCCTCTATAACAGAGTATGGTGGTGTCGGAGACGGCAAGACGCTAAA 240
|||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 181 CAGATCCCACAGTGCCTCCATAACAGAGTACGGTGGTGTAGGAGACGGCAAGACGCTAAA 240
Query 241 CACAAAGGCCTTCCAGAGCGCCGTCGATCATCTCAGCCAATACTCATCTGACGGCGGATC 300
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 241 CACAAAGGCCTTCCAGAGCGCCGTTGATCATCTCAGCCAATACTCATCTGAAGGCGGAGC 300
Query 301 TCAGCTCTTTGTACCCGCCGGAAAATGGCTCACCGGTAGTTTCAACCTCACAAGCCATTT 360
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 301 ACAGCTCTTTGTACCCGCCGGGAAATGGCTCACCGGAAGTTTCAACCTCACAAGCCATTT 360
Query 361 CACTCTGTTTCTTCACAAAGACGCAATTCTTCTCGCTGCTCAAGACTTAAACGAATACCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACTCTGTTTCTTCACAAAGACGCAATTCTTCTCGCTGCTCAAGACTTAAACGAATACCC 420
Query 421 AATTCTAAAGGCTTTGCCTTCGTACGGACGAGGACGTGACGCCGCCGGTGGAAGATTCGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTCTAAAGGCTTTGCCTTCGTACGGACGAGGACGTGACGCCGCCGGTGGAAGATTCGC 480
Query 481 TAGTCTCATCTTCGGAACTAATCTCTCCGACGTAATTATCACCGGGAACAACGGTACAAT 540
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 TAGTCTCATCTTCGGCACTAATCTCTCCGACGTAATTATCACCGGGAACAACGGCACAAT 540
Query 541 CGACGGTCAAGGATCGTTTTGGTGGCAAAAATTCCACGGTGGCAAGCTAAAATACACTCG 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 CGACGGTCAAGGATCGTTTTGGTGGCAAAAGTTCCACGGTGGCAAGCTAAAATACACTCG 600
Query 601 CCCGTACCTGATTGAGTTAATGTTCTCAGATACAATTCAGATTTCAAATCTAACGTTCCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCGTACCTGATTGAGTTAATGTTCTCAGATACAATTCAGATTTCAAATCTAACGTTCCT 660
Query 661 TGATTCTCCATCGTGGAACATCCACCCAGTGTATAGTAGCAATATCATCGTGAAAGGCGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 TGATTCTCCATCGTGGAACATCCACCCAGTGTATAGTAGCAATATCATCGTAAAAGGCGT 720
Query 721 TACGATCATCGCTCCGGTGAAATCTCCGAACACCGACGGAATCAATCCAGATTCTTGCAC 780
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TACGATCATCGCCCCGGTAAAATCTCCGAACACCGACGGAATCAATCCAGATTCTTGCAC 780
Query 781 GAACACGAGGATCGAAGACTGTTACATAATCTCCGGGGACGATTGCATCGCCGTGAAAAG 840
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 781 GAACACGAGGATCGAAGACTGTTACATCATATCCGGCGACGATTGCATCGCCGTGAAAAG 840
Query 841 CGGATGGGACGAATACGGAATCTCATTCGGAATGCCGACGAAGCACCTCGTGATCCGTAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGGATGGGACGAATACGGAATCTCATTCGGAATGCCGACGAAGCACCTCGTGATCCGTAG 900
Query 901 ATTAACCTGTATCTCACCTTACAGCGCCGCGATCGCTCTCGGAAGCGAAATGTCCGGCGG 960
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATTAACCTGTATCTCACCGTACAGCGCCGCGATCGCTCTCGGAAGCGAAATGTCCGGCGG 960
Query 961 AATCGAAGACGTGAGAGCGGAAGATATCACCGCATACCAAACAGAATCCGGCGTACGGAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AATCGAAGACGTGAGAGCGGAAGATATCACCGCATACCAAACAGAATCCGGCGTACGGAT 1020
Query 1021 AAAAACCGCCGTGGGAAGAGGAGCTTTCGTGAAGAACATATACGTTAAAGGAATGAATCT 1080
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 AAAAACCGCCGTAGGAAGAGGAGCTTTCGTGAAGAACATATACGTAAAAGGAATGAATCT 1080
Query 1081 ACACACGATGAAATGGGTTTTTTGGATGACCGGAAATTACAAAGCTCATGCTGATTCTCA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACACACGATGAAATGGGTTTTTTGGATGACCGGAAATTACAAAGCTCATGCTGATTCTCA 1140
Query 1141 TTATGATCCTCACGCTCTACCGGAGATAACCGGGATTAATTACAGAGATATTGTAGCTGA 1200
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTACGATCCTCACGCTCTACCGGAGATAACCGGGATTAATTACAGAGATATTGTAGCTGA 1200
Query 1201 GAATGTTTCTATGGCGGGAAGGTTAGAGGGAATCTCTGGAGATCCGTTTACTGGGATTTG 1260
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1201 GAATGTTTCTATGGCTGGAAGGTTAGAGGGAATCTCTGGAGATCCTTTTACTGGGATTTG 1260
Query 1261 TATTTCGAATGCAACGATTTCTATGGCGGCTAAACATAAGAAAGCGATTTGGATGTGTAG 1320
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1261 TATTTCGAATGCAACGATTTCTATGGCGGCTAAGCATAAGAAAGCGATTTGGATGTGTAG 1320
Query 1321 TGATGTTGAAGGTGTTACGAGTGGTGTTGATCCTAAGCCTTGTGATTTGCTTGATGGACA 1380
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TGATGTTGAAGGAGTTACGAGTGGTGTTGATCCTAAGCCTTGTGATTTGCTTGATGGACA 1380
Query 1381 AGAATC-G-GA-GACGAAGAAGAAGATGATTGACGGTGGATGTGATTTTCCGACTGATGT 1437
|||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 AGAATCAGAGACGACGAAGAAGAAGATGATTGACGGTGGATGTGATTTTCCTACTGATGT 1440
Query 1438 GTTGGAGATTGATAATGTTGAGCTTAAGACTTGTAGTTATCAAATGAGTTAGCAATCTTG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1441 GTTGGAGATTGATAATGTTGAGCTTAAGACTTGTAGTTATCAAATGAGTTAGCAAAGTTG 1500
Query 1498 TA 1499
||
Sbjct 1501 TA 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74096004420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5