BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486633

Length=969
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61500.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   603    1e-171


> AT3G61500.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G46080.1); 
Has 90 Blast hits to 90 proteins in 16 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22760628-22762388 
REVERSE LENGTH=951
Length=951

 Score =  603 bits (326),  Expect = 1e-171
 Identities = 410/449 (91%), Gaps = 11/449 (2%)
 Strand=Plus/Plus

Query  38   TATTGAACAACTTTGAGTCATCATTAACCGAGAGATTGAAGAAACTCATACCTCAAAACA  97
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  86   TATTGAACAACTTTGAGTCATCATTAACCGAGAGATTGAAGAAACTCATACCTCAAAATA  145

Query  98   AAGATGAGATTCTCACCTTACCTTGGATGATTATTGCTATGGAATTACTTTATGATACAC  157
             ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct  146  CAGATGAGATTCTCACCTTACCTTGGATGATTCTAGCTATGGAATTACTTTATGATACAC  205

Query  158  ATAATGATATAAACAT-CATGATCACTGATCTCAAGCTTCATGATATGACTGATCCGGAT  216
            |||||||||||||||| | | ||||||||||||||||||||| ||||||||||| |||| 
Sbjct  206  ATAATGATATAAACATTC-TCATCACTGATCTCAAGCTTCATTATATGACTGATTCGGAG  264

Query  217  CATGGATCTTGGTGTGA-AGTTTACATGAAAATAAATGTAAAATTTCTGGATCTTTTTAA  275
            ||||||| ||||| ||| | || ||||||| ||||||  |||||| || ||||| | |||
Sbjct  265  CATGGATATTGGTTTGAGAATT-ACATGAACATAAATACAAAATTGCTCGATCTGTGTAA  323

Query  276  CGCTTTTA-GCTCCTTGCT-CTTAAGCATGAACCATGGCATT-TTATGCTTAAAGCTCCT  332
            |||||||| | |||||||| | | | |||||||||||||||| || ||||||||| ||||
Sbjct  324  CGCTTTTATG-TCCTTGCTTCGTCA-CATGAACCATGGCATTGTT-TGCTTAAAGTTCCT  380

Query  333  TAGGCATAAATTAGAAATGAAATCTGAGGATCAATGCACTGAGATTTGTTCCACACTTGA  392
            |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  381  TAGGCATAAATTAGAAATGAAATCTGAGGATCTATGCACTGAGATTTGTTCCGCACTTGA  440

Query  393  TAGTTGGAGGGAAAATATTACCGCGGAAATCTCTAAATGCCGCAAAGTTCTTGGGAGATA  452
            |||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct  441  TAGTTGGAGGGAAAATATCACCGCGGAAATATCGAAATGCCGCGAAGTTCTTGGGAGATA  500

Query  453  TGTTAAATCATTAAACTTTCATAAA-GTC  480
            |||| |||||||||||||||||||| |||
Sbjct  501  TGTTGAATCATTAAACTTTCATAAATGTC  529


 Score =  213 bits (115),  Expect = 3e-54
 Identities = 156/175 (89%), Gaps = 6/175 (3%)
 Strand=Plus/Plus

Query  767  AAGGTGATGATCTTGTTCAAGAATTGTTTGAGGAATCTATTGTGGAATGCAAAGAAGAAG  826
            |||||||||||||||||||||| |  ||| |||||||||||| |||||||||||||||||
Sbjct  629  AAGGTGATGATCTTGTTCAAGAGTCCTTTAAGGAATCTATTGAGGAATGCAAAGAAGAAG  688

Query  827  TCGAGAAACTGGATCAAAGGGT-AGATGAACTCT-CAAGGAAAATTGACAACTTGTCT-A  883
            ||||||||||||| ||  |||| ||||||| ||| || ||||||||| |||||||||| |
Sbjct  689  TCGAGAAACTGGAACAT-GGGTTAGATGAAATCTTCA-GGAAAATTGGCAACTTGTCTGA  746

Query  884  GTATAACCTTTAAAGGACGTCAAACCATTCGTGAAGGTTTATTTGATTCAATGAT  938
             | ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct  747  -TGTAACCTTTAAAGGACGTGAAATCATTCGTGACGGTTTATTTGATTCAATGAT  800


 Score =  174 bits (94),  Expect = 1e-42
 Identities = 100/103 (97%), Gaps = 0/103 (0%)
 Strand=Plus/Plus

Query  558  TGTGTTTGTGATAGTTTTGTCGAATTCCGACAAAGATATTTTGCCTATACATGTCTCGAA  617
            ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct  526  TGTCTTTGTGATAGTTTTGTCGAATTCCGACAAAGATATTTTGCCTATATATGTCTGGAA  585

Query  618  GCAATCATTGTGGAAAAAAGATTTCTTGGATTTGCAGACTATC  660
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  586  GCAATCATTGTGGAAAAAAGATTTCTTGGATTTGCAGACTATC  628



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47421034768


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5