BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486638
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61530.1 | Symbols: PANB2 | Phosphoenolpyruvate carboxylase ... 1925 0.0
AT2G46110.1 | Symbols: PANB1, KPHMT1 | ketopantoate hydroxymeth... 885 0.0
> AT3G61530.1 | Symbols: PANB2 | Phosphoenolpyruvate carboxylase
family protein | chr3:22771442-22773356 REVERSE LENGTH=1358
Length=1358
Score = 1925 bits (1042), Expect = 0.0
Identities = 1167/1225 (95%), Gaps = 18/1225 (1%)
Strand=Plus/Plus
Query 1 AATTCCAAAATCGCTTTCATCAGCAACAACAATGGCTGCTTCGCTCGTCAGGA---GTTG 57
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 13 AATTCCAAAATCGCTTTCATCAGCAACAACAATGGCTGCTTCGCTCGTCAGGAGTTGTTG 72
Query 58 CTCTCGTGCTTCGAGGGCCATCACCACCGTCCGGTTTATGAGCAACGTACCGGAGAACAC 117
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 73 CTCTCGTGCTTCGAGAGCCATCACCACCGTCCGGTTTATGAGCAACGTACCGGAGGACAC 132
Query 118 GGTTTACGGAGGACCGAAATCGCAGAACCCGAATCAGAGAGTGACTTTGACGCAATTGAG 177
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 133 GGTTTACGGAGGACCGAAACCGCAGAACTCGAATCAGAGAGTGACTTTGACGCAATTGAG 192
Query 178 ACAGAAGCATCGGAAAGGTGAGCCGATTACTATGGTCACCGCCTATGATTATCCGTCTGC 237
||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 193 ACAGAAGCATCGGAAAGGTGAGCCGATAACTATGGTCACCGCCTACGATTACCCTTCTGC 252
Query 238 CGTTCACATCGATACAGCCGGAATTGATGTTTGTCTCGTCGGAGATTCAGCTGCAATGGT 297
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 253 CGTTCACATCGATACAGCTGGAATCGATGTTTGTCTCGTCGGAGATTCAGCTGCCATGGT 312
Query 298 TGTTCATGGCTATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCG 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TGTCCATGGCTATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCG 372
Query 358 CGCCGTCGCTCGTGGAGCCAAAAGACCACTTCTTGTTGGCGATTTGCCATTTGGTACTTA 417
|||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 373 CGCCGTTGCTCGCGGAGCCAAAAGACCACTTCTTGTCGGCGATTTGCCGTTTGGTACTTA 432
Query 418 TGAATCTAGCACCAATCAGGCGGTTGATACTGCAGTAAGAGTGTTGAAAGAAGGAGGAAT 477
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 433 TGAATCTAGCACCAATCAGGCGGTTGATACTGCAGTTAGGGTGTTGAAAGAAGGAGGAAT 492
Query 478 GGATGCTATTAAACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GGATGCTATTAAACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGT 552
Query 538 GGAAGCAGGAATTGCTGTTATGGGACATGTTGGGTTGACTCCTCAAGCTATCAGTGTTCT 597
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GGAAGCAGGGATTGCCGTTATGGGACATGTTGGGTTGACTCCTCAAGCTATCAGTGTTCT 612
Query 598 TGGTGGTTTTAGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGC 657
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGGTGGTTTCAGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGC 672
Query 658 AATGGCTTTACAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCGCCTCCTGT 717
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 673 TATGGCTTTGCAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCACCTCCTGT 732
Query 718 GGCTGCTGCTGCAACCTCTGCTCTTCATATTCCAACCATTGGCATAGGAGCTGGCCCTTT 777
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 733 GGCTGCTGCTGCAACCTCTGCTCTTAATATTCCAACCATTGGCATAGGAGCTGGCCCTTT 792
Query 778 CTGCAGTGGTCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 CTGCAGTGGTCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCA 852
Query 838 TGCTAAGGTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAACAA 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CGCTAAGGTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAACAA 912
Query 898 AGCCCTCTTAGAGTATAAGGAAGAAGTATCTAAACACTTGTTTCCAGGTCTTTCTCATAG 957
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 913 AGCCCTCTTGGAGTATAAGGAAGAAGTATCCAAACACTTGTTTCCAGGTCCTTCTCACAG 972
Query 958 CCCTTACAAGATCGCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAA-TCTGG 1016
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 973 CCCTTACAAGATCTCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAAAT-TGG 1031
Query 1017 GATTAGATAAGGCTGCTTCTGCTGCAGCAGCATCAGCTGAAAAGATGGAGCATTCAGATT 1076
|||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1032 GATTAGATAAAGCTGCTTCTGATGCAGCAGCATCAGCTGAAAAGATGGATCATTCAGATT 1091
Query 1077 CACCATCTTCTCAGTGACAAAGCTGTACCAATTCTCTTAGCTCTTCATTTTGAGTAGGCA 1136
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1092 CACCATCTTCTCAGTGACAAAGCTGTTGCAATTCTCGTAGCTCTTCATTTTGAGTAGG-- 1149
Query 1137 GGCAGATCTGGTTCAAGAAATAAAAATCCTTTAATAGGATAGTTTTTTGCGGGTAAAATT 1196
| || |||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 1150 ------T-TG----AAGAAATAAAAATCCTTTAATAGGATAGTTATTAGCGGGTAAAACT 1198
Query 1197 AGTGTAATCCATAGGAGCTATTTCA 1221
|||||||||||||||||||||||||
Sbjct 1199 AGTGTAATCCATAGGAGCTATTTCA 1223
> AT2G46110.1 | Symbols: PANB1, KPHMT1 | ketopantoate hydroxymethyltransferase
1 | chr2:18954570-18956530 REVERSE LENGTH=1400
Length=1400
Score = 885 bits (479), Expect = 0.0
Identities = 875/1067 (82%), Gaps = 24/1067 (2%)
Strand=Plus/Plus
Query 16 TTCATCAGCAACAACAATGGCTG-CTTCGCTCGTC-AGGAGTTGCTCTCG-TGCTTCGAG 72
|||||| | ||||||||||| | | || ||| | |||| ||||||||| | | || |
Sbjct 105 TTCATCTTC-ACAACAATGGC-GTCCTCACTC-ACTAGGAATTGCTCTCGCTTC-TCAAA 160
Query 73 GGCCATCACCACCGTCCGGTTT-ATGAGCAACGTACCGGAGAACACGGTTTACGGAGGAC 131
||||| | | |||| |||| ||||| ||| ||||||| ||||| || ||||||||||
Sbjct 161 AGCCAT---CTCTGTCC-GTTTCATGAGTAACCTACCGGAAAACACCGTCTACGGAGGAC 216
Query 132 CGAAA-TCGCAGAACCCGAATCAGAGAGTGACTTTGACGCAAT-TGAGACAGAAGCATCG 189
| ||| | || ||||| || || |||||||| | |||| || | ||||| || || ||
Sbjct 217 C-AAAGCCACAAAACCCAAACCAAAGAGTGACGCTAACGC-ATCTCAGACAAAAACACCG 274
Query 190 GAAAGGTGAGCCGATTACTATGGTCACCGCCTATGATTATCCGTCTGCCGTTCACATCGA 249
|| ||| || ||||| || | || || ||||| ||||| || || |||||||| | ||
Sbjct 275 GAGAGGAGAACCGATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGA 334
Query 250 TACAGCCGGAATTGATGTTTGTCTCGTCGGAGATTCAGCTGCAATGGTTGTTCATGGCT- 308
||||| || || ||||||||||| ||||| || |||||| | |||||||||||||| |
Sbjct 335 CACAGCTGGTATCGATGTTTGTCTTGTCGGTGACTCAGCTTCCATGGTTGTTCATGG-TC 393
Query 309 ATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCGCGCCGTCGCTC 368
| ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 394 ACGACACAACACTTCCTATCTCCTTAGACGAGATGCTTGTTCATTGTCGTGCCGTTGCTC 453
Query 369 GTGGAGCCAAAAGACCACTTCTTGTTGGCGATTTGCCATTTGGTACTTATGAATCTAGCA 428
| || || ||| |||| || || ||||| || |||||||||||||| || || || |||
Sbjct 454 GAGGCGCTAAACGACCTCTCCTAGTTGGTGACTTGCCATTTGGTACCTACGAGTCAAGCT 513
Query 429 CCAATCAGGCGGTTGATACTGCAGTAAGAGTGTTGAAAGAAGGAGGAATGGATGCTATTA 488
| | |||||||||||||||||| || || || ||||| ||||||||||||||||| ||||
Sbjct 514 CTAGTCAGGCGGTTGATACTGCGGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTA 573
Query 489 AACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGTGGAAGCAGGAA 548
| || |||||||||||| |||| |||||||||||||||||| | || || ||||||||||
Sbjct 574 AGCTCGAAGGAGGATCAGCTTCTAGGATCACTGCTGCAAAAGCTATAGTTGAAGCAGGAA 633
Query 549 TTGCTGTTATGGGACATGTTGGGT-TGACTCCTCAAGCTATCAGTGTTCTTGGTGGTTTT 607
|||| ||||| || |||| ||||| | || ||||| || || || ||||||||||||||
Sbjct 634 TTGCGGTTATTGGTCATG-TGGGTCTAACCCCTCAGGCGATTAGCGTTCTTGGTGGTTTC 692
Query 608 AGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGCAATGGCTTTA 667
|| || || |||| |||||| |||||||||||||| ||||| || |||||||||||||||
Sbjct 693 AGACCCCAAGGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTA 752
Query 668 CAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCGCCTCCTGTGGCTGCTGCT 727
||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||
Sbjct 753 CAAGAAGCTGGATGTTTTTCGGTTGTTTTGGAATGCGTTCCACCTCCTGTAGCTGCTGCT 812
Query 728 GCAACCTCTGCTCTTCAT-ATTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGG 786
||||| ||||| || || || |||||||||||||| || ||||| ||||||||||||||
Sbjct 813 GCAACTTCTGCCCT-CAAGATACCAACCATTGGCATTGGGGCTGGACCTTTCTGCAGTGG 871
Query 787 TCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCATGCTAAGGT 846
||||| |||| |||||||||||||| || |||||||| |||||||||||||| |||||
Sbjct 872 ACAGGTGCTAGTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGT 931
Query 847 TACTCCAAAGTTTTGCAAACAGTACGCTCAA-GTAGGAGAAGTGATCAACAAAGCCCTCT 905
|||||||||||||||||| ||||||||| || || ||||||||||| |||||||||||
Sbjct 932 TACTCCAAAGTTTTGCAAGCAGTACGCT-AATGTCGGAGAAGTGATTAACAAAGCCCTAA 990
Query 906 TAGAGTATAAGGAAGAAGTATCTAAACACTTGTTTCCAGGTCTTTCTCATAGCCCTTACA 965
| || || || |||||||| |||||| | |||||||||||| |||||| || |||||||
Sbjct 991 TGGAATACAAAGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACA 1050
Query 966 AGATCGCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAATCTGGGATTAGATA 1025
||||| | |||| || || || || ||||||| |||||| ||||| || || || || |
Sbjct 1051 AGATCACAGCAAGTGAGCTCGATGGGTTCTTAACCGAGTTGCAGAAGCTTGGTTTTGACA 1110
Query 1026 AGGCTGCTTCTGCTGCAGCAGCATCAGCTGAAAAGATGGAGCATTCA 1072
||||||||||||| ||||| | ||||||| || ||||||| ||||
Sbjct 1111 AGGCTGCTTCTGCAGCAGCTTTAGCAGCTGAGAACATGGAGCCTTCA 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5