BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486640
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61540.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2551 0.0
> AT3G61540.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:22773386-22775827 FORWARD LENGTH=1689
Length=1689
Score = 2551 bits (1381), Expect = 0.0
Identities = 1603/1707 (94%), Gaps = 27/1707 (2%)
Strand=Plus/Plus
Query 1 GAATAAAAACGATGTTGGCGACTCACGCGCTGGTGACTCCGATTCCAAAGTTGACTGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GAATAAAAACGATGTTGGCGACTCACGCGCTGGTGACTCCGATTCCAAAGTTGACTGCTT 62
Query 61 TCGTACTCTCTTTATCTACTACTCCATCGAA-ATCGTCTGGTTCAGTTCCGGGTTTTATC 119
||||||||||| |||||||||||||||| || || ||||||||| ||||||||||| ||
Sbjct 63 TCGTACTCTCTCTATCTACTACTCCATC-AAGATTGTCTGGTTCTGTTCCGGGTTTGATT 121
Query 120 AATTTCTATCGTCGCCGGAGATTTTGTCGTGTAATCACTTCCATGGCTGGAGCAGAATCG 179
||||||| ||||||||||||||||||||||||||||| |||||||||| ||| | ||||
Sbjct 122 GATTTCTACCGTCGCCGGAGATTTTGTCGTGTAATCACCTCCATGGCTGAAGCGGGATCG 181
Query 180 GTCTCCGTCGA-GATAGCTGGGGAATCGAGGTCGGAGCATGTCACAGGGAAGTGGTTTTC 238
|| | |||||| | ||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 182 GTTTACGTCGATG-TAGCTGGGGAATCGAAGTCGGAGCATGTTACTGGGAAGTGGTTTTC 240
Query 239 GGTGCCGGAGCTCCGATTGCGTGACCACCGGTTCATAGTTCCTCTTGATTATTCCTTCAA 298
|||||||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 241 GGTGCCGGAGCTCCGACTGCGTGACCACCGGTTCATAGTTCCTCTTG---A----TT--A 291
Query 299 TTCCAAAACTTCTCCCAAAATCACCGTCTTCGCTCGAGAAATCGTTGCGGGTGGGAAAGA 358
|||||||| |||||||||||| |||||||| |||||||| |||||||||| |||||||||
Sbjct 292 TTCCAAAAGTTCTCCCAAAATTACCGTCTTTGCTCGAGAGATCGTTGCGGTTGGGAAAGA 351
Query 359 GGAACAAGCAATGCCGTATTTATTGTATTTACAAGGTGGTCCAGGATTTGAAGGTCCAAG 418
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 352 GGAGCAAGCAATGCCGTATTTATTGTATTTGCAAGGTGGTCCAGGATTTGAAGGTCCAAG 411
Query 419 GCCTAGTGAAGCTAGTGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGCGTTATCCTACT 478
|||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 412 GCCTAGTGAAGCTAGTGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGAGTGGTCTTACT 471
Query 479 TGATCAAAGAGGAACAGGCTTGTCAACTCCTTTAACATCTTCCTCTATGCTTCAATTCAA 538
|||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 472 CGATCAACGAGGAACAGGCTTGTCCACTCCTTTAACATGTTCCTCTATGCTTCAATTCAA 531
Query 539 ATCAGCAAAGGATTTAGCTGATTATTTGGTTCACTTTCGAGCTGATAATATAGTTAAGGA 598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 532 ATCAGCAAAGGAATTAGCTGATTATTTGGTTCACTTTCGAGCTGATAATATAGTTAAAGA 591
Query 599 TGCTGAGTTTATTAGAGTTCGTCTTGTTCCTAATGCTGATCCGTGGACAATTTTGGGTCA 658
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 592 TGCTGAGTTTATTAGAGTTCGTCTTGTTCCTAAGGCTGATCCTTGGACAATTTTGGGTCA 651
Query 659 GAGTTTTGGTGGCTTTTGCGCACTTACATATTTGAGCTTTGCGCCAGAAGGACTTAAACA 718
|||||| ||||||||||| |||||||||||| |||| ||||| || |||||||| |||||
Sbjct 652 GAGTTTCGGTGGCTTTTGTGCACTTACATATCTGAGTTTTGCACCCGAAGGACTCAAACA 711
Query 719 AGTGCTAATAACTGGAGGAATCCCACCAATTGGCAAAACATGTACAGCAGATGATGTGTA 778
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||
Sbjct 712 AGTGCTAATAACTGGAGGAATTCCACCAATTGGTAAAGCATGTACAGCAGATGATGTATA 771
Query 779 TGAAGCCGGTTTTGAACAAGTTGCTCGCCAAAACGAGAAATACTACAAGAGATTCCCTGA 838
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 772 TGAAGCCGGTTTTGAACAAGTTGCTCGCCAAAATGAAAAATACTACAAGAGATTCCCTCA 831
Query 839 AGACATTGAGATTGTTCGCGAAATAGTAAAATACTTGGTTGAATCTGAAGGTGGCGGGGT 898
|||||||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||||
Sbjct 832 AGACATTGAGATTGTTCGTGAACTCGTAAATTACTTGGCTGAATCTGAAGGTGGCGGGGT 891
Query 899 ACCTCTTCCATCAGGAGGCATTCTCACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGG 958
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 892 ACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGG 951
Query 959 TTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATGTTGGAGAGAGTATGGGATCC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATGTTGGAGAGAGTATGGGATCC 1011
Query 1019 TATTTTAGTTACTGGAGCTCCAAAGCGTATTAGTCAGTTCTTCTTAAACGCTTTTGAGAG 1078
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1012 TATTTTAGTTACTGGAGCTCCAAAGTGTATTAGTCAGTTCTTCTTAAACGCTTTTGAGAG 1071
Query 1079 TTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACGAGGCCATATACTGTGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACGAGGCCATATACTGTGA 1131
Query 1139 GGGTGCTTCATCAGGATGGTCTGCTCATAGATTACGAGATAAATATGAGTACAAATTCGA 1198
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1132 GGGTGCTTCATCAGGATGGTCTGCTCATAGATTACGGGATAAATATGAGTACAAATTCGA 1191
Query 1199 CGCAATGAAGGCAATCAAAGAAAGTCAGCCTGTACTTTTCACAGGAGAGATGATATTTCC 1258
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1192 CGCAATGAAGGCAGTCAAAGAAAGTCAGCCTGTACTCTTCACAGGAGAGATGATATTTCC 1251
Query 1259 ATGGATGTTTGATGAGATTCATGCCTTGAAGCCATTTAAAGCTGTCGCCGATCTTTTGGC 1318
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1252 ATGGATGTTTGATGAAATTCATGCCTTGAAGCCATTTAAAGCTGCCGCCGATCTTTTGGC 1311
Query 1319 CAAGAAAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTACATAATAACAAGGTGCC 1378
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1312 CAAGAAAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAGGTGCC 1371
Query 1379 TGTTGCTGCAGCGGTATACTACGAAGATATGTATGTAAACTTCAAGCTAGTGACAGAAAC 1438
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1372 TGTTGCTGCAGCGGTTTACTACGAAGATATGTATGTAAACTTCAAGCTGGTGACGGAAAC 1431
Query 1439 AGCTTCTCAGATTTCGGGTATCAGGCTTTGGGTAACGAATGAGTTTATGCATTCGGGTCT 1498
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1432 AGCTTCTCATATATCGGGTATCAGACTTTGGGTAACGAATGAGTTTATGCATTCGGGTCT 1491
Query 1499 TCGTGATGCTGGAAGACAAATTATTGATCATTTGTTGGGAATGATCAATGGGAAAAAGCC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 TCGTGATGCTGGAAGACAAATTATTGATCATTTGTTGGGAATGATCAATGGGAAAAAGCC 1551
Query 1559 TCTCTTTTGAGTTTTGATTCCTTGTACTAGTC-GAAGCTTTGTGACTTGTGGTTTTCTTC 1617
|||||||||| || ||||||||||||| | | |||||||||||||||||||||||
Sbjct 1552 TCTCTTTTGA-TT------CCTTGTACTAGTCAGTA-CTTTGTGACTTGTGGTTTTCTTC 1603
Query 1618 TTTGTAC-CTT-CTTTGAGAATTAAGTGAGTAAAAA-GAAAGAGAATAAATAAA-GAAAA 1673
|| ||| ||| ||||||||||||| |||||||||| |||||||||| |||||| ||||
Sbjct 1604 GTTATACACTTTCTTTGAGAATTAAATGAGTAAAAAAGAAAGAGAATGAATAAAAGAAA- 1662
Query 1674 GTCTTTCAAGTTTTGAGTTTCCTTTCC 1700
|||||||||||||||| ||||||||||
Sbjct 1663 GTCTTTCAAGTTTTGACTTTCCTTTCC 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84035712330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5